Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BFHIEPOD_34 | 20539 | 22533 | tet(Q) | ARO:3000191 | tet(Q) | 98.93 | 101.07 | Z21523.1 |
| BFHIEPOD_100 | 222 | 1022 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BFHIEPOD_100 | 222 | 1022 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| BFHIEPOD_34 | 20587 | 22499 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.32 | 99.33 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BFHIEPOD_34 | 20587 | 22500 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.90 | 99.53 | WP_002560998.1 |
| BFHIEPOD_100 | 222 | 1019 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BFHIEPOD_22 | 9562 | 7982 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BFHIEPOD_1 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_2 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_3 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_4 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_5 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_13 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_17 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_18 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_19 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_20 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_21 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_22 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_23 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_24 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_25 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_26 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_27 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_28 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_29 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_30 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_31 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_32 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_33 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_34 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_35 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_36 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_37 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_38 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_39 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_40 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_41 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_42 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_43 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_44 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_45 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_46 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_47 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_48 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_49 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_50 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_51 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_52 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_53 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_54 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_55 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_56 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_57 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_58 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_59 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_60 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_61 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_62 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_63 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_64 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_65 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_66 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_67 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_68 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_69 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_70 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_71 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_72 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_73 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_74 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_75 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_76 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_77 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_78 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_79 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_80 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_81 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_82 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_83 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_84 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_85 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_87 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_88 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_89 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_90 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_91 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_92 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_93 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_94 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_95 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_96 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_97 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_98 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_99 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_100 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_101 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_102 | 0.0 | 1.0 | 0.0 |
| BFHIEPOD_103 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_104 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_105 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_106 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_107 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_108 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_109 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_110 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_111 | 1.0 | 0.0 | 1.0 |
| BFHIEPOD_112 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BFHIEPOD_49 | 14597 | 20141 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)