Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMHILAMC_50 | 8929 | 10854 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PMHILAMC_64 | 1045 | 1869 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| PMHILAMC_64 | 3 | 842 | ErmF | ARO:3000498 | ErmF | 98.50 | 104.89 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PMHILAMC_64 | 1045 | 1869 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| PMHILAMC_50 | 8929 | 10854 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PMHILAMC_64 | 42 | 842 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMHILAMC_64 | 1048 | 1869 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| PMHILAMC_50 | 8932 | 10854 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PMHILAMC_64 | 42 | 839 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PMHILAMC_59 | 861 | 1441 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMHILAMC_1 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_2 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_3 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_4 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_5 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_6 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_7 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_8 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_9 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_10 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_11 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_12 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_13 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_14 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_15 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_16 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_17 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_18 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_19 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_20 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_21 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_22 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_23 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_24 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_25 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_26 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_27 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_28 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_29 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_30 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_31 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_32 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_33 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_34 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_35 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_36 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_37 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_38 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_39 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_40 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_41 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_42 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_43 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_44 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_45 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_46 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_47 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_48 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_49 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_50 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_51 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_52 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_53 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_54 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_55 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_56 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_57 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_58 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_59 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_60 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_61 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_62 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_63 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_64 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_65 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_66 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_67 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_68 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_69 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_70 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_71 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_72 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_73 | 1.0 | 0.0 | 1.0 |
| PMHILAMC_74 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_75 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_78 | 0.0 | 1.0 | 0.0 |
| PMHILAMC_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMHILAMC_1 | 268570 | 277547 | False | Unknown | VOG4572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)