Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHLENFID_34 | 112040 | 112930 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
| CHLENFID_59 | 23039 | 23839 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CHLENFID_59 | 23039 | 23839 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHLENFID_59 | 23042 | 23839 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| CHLENFID_34 | 112040 | 112927 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
| CHLENFID_5 | 129646 | 130443 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 90.23 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHLENFID_1 | 0.0 | 1.0 | 0.0 |
| CHLENFID_2 | 0.0 | 1.0 | 0.0 |
| CHLENFID_3 | 0.0 | 1.0 | 0.0 |
| CHLENFID_4 | 0.0 | 1.0 | 0.0 |
| CHLENFID_5 | 0.0 | 1.0 | 0.0 |
| CHLENFID_6 | 0.0 | 1.0 | 0.0 |
| CHLENFID_7 | 0.0 | 1.0 | 0.0 |
| CHLENFID_8 | 0.0 | 1.0 | 0.0 |
| CHLENFID_9 | 0.0 | 1.0 | 0.0 |
| CHLENFID_10 | 0.0 | 1.0 | 0.0 |
| CHLENFID_11 | 0.0 | 1.0 | 0.0 |
| CHLENFID_12 | 0.0 | 1.0 | 0.0 |
| CHLENFID_13 | 0.0 | 1.0 | 0.0 |
| CHLENFID_14 | 0.0 | 1.0 | 0.0 |
| CHLENFID_15 | 0.0 | 1.0 | 0.0 |
| CHLENFID_16 | 0.0 | 1.0 | 0.0 |
| CHLENFID_17 | 0.0 | 1.0 | 0.0 |
| CHLENFID_18 | 0.0 | 1.0 | 0.0 |
| CHLENFID_19 | 1.0 | 0.0 | 1.0 |
| CHLENFID_20 | 0.0 | 1.0 | 0.0 |
| CHLENFID_21 | 0.0 | 1.0 | 0.0 |
| CHLENFID_22 | 0.0 | 1.0 | 0.0 |
| CHLENFID_23 | 0.0 | 1.0 | 0.0 |
| CHLENFID_24 | 0.0 | 1.0 | 0.0 |
| CHLENFID_25 | 0.0 | 1.0 | 0.0 |
| CHLENFID_26 | 0.0 | 1.0 | 0.0 |
| CHLENFID_27 | 1.0 | 0.0 | 1.0 |
| CHLENFID_28 | 0.0 | 1.0 | 0.0 |
| CHLENFID_29 | 0.0 | 1.0 | 0.0 |
| CHLENFID_30 | 0.0 | 1.0 | 0.0 |
| CHLENFID_31 | 1.0 | 0.0 | 1.0 |
| CHLENFID_32 | 0.0 | 1.0 | 0.0 |
| CHLENFID_33 | 1.0 | 0.0 | 1.0 |
| CHLENFID_34 | 0.0 | 1.0 | 0.0 |
| CHLENFID_35 | 0.0 | 1.0 | 0.0 |
| CHLENFID_36 | 0.0 | 1.0 | 0.0 |
| CHLENFID_37 | 0.0 | 1.0 | 0.0 |
| CHLENFID_38 | 1.0 | 0.0 | 1.0 |
| CHLENFID_39 | 1.0 | 0.0 | 1.0 |
| CHLENFID_40 | 1.0 | 0.0 | 1.0 |
| CHLENFID_41 | 1.0 | 0.0 | 1.0 |
| CHLENFID_42 | 1.0 | 0.0 | 1.0 |
| CHLENFID_43 | 1.0 | 0.0 | 1.0 |
| CHLENFID_44 | 1.0 | 0.0 | 1.0 |
| CHLENFID_45 | 0.0 | 1.0 | 0.0 |
| CHLENFID_46 | 1.0 | 0.0 | 1.0 |
| CHLENFID_47 | 1.0 | 0.0 | 1.0 |
| CHLENFID_56 | 0.0 | 1.0 | 0.0 |
| CHLENFID_58 | 0.0 | 1.0 | 0.0 |
| CHLENFID_59 | 0.0 | 1.0 | 0.0 |
| CHLENFID_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHLENFID_4 | 15688 | 36976 | False | Siphoviridae | VOG7268, |
| CHLENFID_12 | 300211 | 306278 | False | Myoviridae | / |
| CHLENFID_58 | 166077 | 176901 | False | Unknown | VOG1093, |
Phigaro v2.4.0 (Database: Jan. 2024 release)