Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NFGDENJA_34 | 217232 | 218122 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
| NFGDENJA_2 | 23040 | 23840 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NFGDENJA_2 | 23040 | 23840 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NFGDENJA_2 | 23043 | 23840 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| NFGDENJA_34 | 217235 | 218122 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
| NFGDENJA_6 | 959 | 1756 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 90.23 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NFGDENJA_1 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_2 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_3 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_4 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_5 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_6 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_7 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_8 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_9 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_10 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_11 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_12 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_13 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_14 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_15 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_16 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_17 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_18 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_19 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_20 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_21 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_22 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_23 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_24 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_25 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_26 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_27 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_28 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_29 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_30 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_31 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_32 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_33 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_34 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_35 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_36 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_37 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_38 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_39 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_40 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_41 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_42 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_43 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_44 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_45 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_46 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_47 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_48 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_49 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_50 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_51 | 1.0 | 0.0 | 1.0 |
| NFGDENJA_56 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_60 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_61 | 0.0 | 1.0 | 0.0 |
| NFGDENJA_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NFGDENJA_5 | 15682 | 36970 | False | Siphoviridae | VOG7268, |
| NFGDENJA_12 | 50965 | 58143 | False | Myoviridae | / |
| NFGDENJA_61 | 8415 | 19239 | False | Unknown | VOG0982, |
Phigaro v2.4.0 (Database: Jan. 2024 release)