Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBEENIFA_34 | 217151 | 218041 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| LBEENIFA_22 | 17345 | 19270 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LBEENIFA_41 | 2 | 892 | ErmF | ARO:3000498 | ErmF | 98.50 | 111.28 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LBEENIFA_22 | 17345 | 19270 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| LBEENIFA_41 | 92 | 892 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBEENIFA_22 | 17348 | 19270 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LBEENIFA_34 | 217154 | 218041 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| LBEENIFA_41 | 92 | 889 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LBEENIFA_59 | 340 | 1019 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBEENIFA_1 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_2 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_3 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_4 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_5 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_6 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_7 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_8 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_9 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_10 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_11 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_12 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_13 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_14 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_15 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_16 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_17 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_18 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_19 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_20 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_21 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_22 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_23 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_24 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_25 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_26 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_27 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_28 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_29 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_30 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_31 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_32 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_33 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_34 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_35 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_36 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_37 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_38 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_39 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_40 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_41 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_42 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_43 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_44 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_45 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_46 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_47 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_48 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_49 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_50 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_51 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_52 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_53 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_54 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_55 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_56 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_57 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_59 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_60 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_61 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_62 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_63 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_64 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_65 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_66 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_67 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_68 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_69 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_70 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_71 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_72 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_73 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_74 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_75 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_76 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_77 | 1.0 | 0.0 | 1.0 |
| LBEENIFA_78 | 0.0 | 1.0 | 0.0 |
| LBEENIFA_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBEENIFA_8 | 38238 | 41516 | False | Siphoviridae | VOG2860 |
Phigaro v2.4.0 (Database: Jan. 2024 release)