Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AJNCFDOD_12 | 100216 | 101421 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| AJNCFDOD_24 | 27098 | 29023 | tet(Q) | ARO:3000191 | tet(Q) | 96.88 | 97.56 | Z21523.1 |
| AJNCFDOD_29 | 18315 | 19115 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| AJNCFDOD_29 | 16103 | 18028 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| AJNCFDOD_27 | 10429 | 11394 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| AJNCFDOD_1 | 3000 | 3890 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AJNCFDOD_27 | 10429 | 11394 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| AJNCFDOD_24 | 27098 | 29023 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | X58717 |
| AJNCFDOD_29 | 18315 | 19115 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AJNCFDOD_27 | 10432 | 11394 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| AJNCFDOD_12 | 99682 | 100191 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| AJNCFDOD_24 | 27098 | 29020 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.84 | 100.00 | WP_004293868.1 |
| AJNCFDOD_1 | 3003 | 3890 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| AJNCFDOD_12 | 100219 | 101421 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| AJNCFDOD_29 | 18318 | 19115 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| AJNCFDOD_29 | 16106 | 18028 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AJNCFDOD_1 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_2 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_3 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_4 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_5 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_6 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_7 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_8 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_9 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_10 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_11 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_12 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_13 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_14 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_15 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_16 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_17 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_18 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_19 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_20 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_21 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_22 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_23 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_24 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_25 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_26 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_27 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_28 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_29 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_30 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_31 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_32 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_33 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_34 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_35 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_36 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_37 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_38 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_39 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_40 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_41 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_42 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_43 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_44 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_45 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_47 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_48 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_49 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_50 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_51 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_52 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_53 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_54 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_55 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_56 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_57 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_58 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_59 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_60 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_61 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_62 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_63 | 1.0 | 0.0 | 1.0 |
| AJNCFDOD_67 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_69 | 0.0 | 1.0 | 0.0 |
| AJNCFDOD_70 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)