Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CFELAOPH_78 | 1186 | 2391 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| CFELAOPH_73 | 288 | 2261 | tet(Q) | ARO:3000191 | tet(Q) | 96.04 | 100.00 | Z21523.1 |
| CFELAOPH_3 | 273 | 2198 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| CFELAOPH_91 | 1 | 807 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.75 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CFELAOPH_91 | 7 | 807 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CFELAOPH_78 | 2416 | 2925 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| CFELAOPH_78 | 1186 | 2388 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
| CFELAOPH_91 | 7 | 804 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| CFELAOPH_73 | 336 | 2258 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
| CFELAOPH_3 | 273 | 2195 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CFELAOPH_1 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_2 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_3 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_4 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_5 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_6 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_7 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_8 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_9 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_10 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_11 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_12 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_13 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_14 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_15 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_16 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_17 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_18 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_19 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_20 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_21 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_22 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_23 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_24 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_25 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_26 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_27 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_28 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_29 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_30 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_31 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_32 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_33 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_34 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_35 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_36 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_37 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_38 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_39 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_40 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_41 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_42 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_43 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_44 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_45 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_46 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_47 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_48 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_49 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_50 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_51 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_52 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_53 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_54 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_55 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_56 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_57 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_58 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_59 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_60 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_61 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_62 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_63 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_64 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_65 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_66 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_67 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_68 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_69 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_70 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_71 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_72 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_73 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_74 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_75 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_76 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_77 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_78 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_79 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_80 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_81 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_82 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_83 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_84 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_85 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_86 | 1.0 | 0.0 | 1.0 |
| CFELAOPH_87 | 0.0 | 1.0 | 0.0 |
| CFELAOPH_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CFELAOPH_12 | 426158 | 435771 | False | Unknown | VOG4573, |
| CFELAOPH_67 | 75204 | 83409 | False | Unknown | VOG0226, |
Phigaro v2.4.0 (Database: Jan. 2024 release)