Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HNLJKBCP_5 | 73583 | 74287 | WalR | 2.36e-115 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| HNLJKBCP_45 | 112610 | 112804 | CspR | 7.51e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HNLJKBCP_45 | 112610 | 112807 | CspA | 1.15e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HNLJKBCP_52 | 2 | 709 | repUS64 | 708 / 954 | 97.46 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HNLJKBCP_1 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_2 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_3 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_4 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_5 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_6 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_7 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_8 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_9 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_10 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_11 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_12 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_13 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_14 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_15 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_16 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_17 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_18 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_19 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_20 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_21 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_22 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_23 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_24 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_25 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_26 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_27 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_28 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_29 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_30 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_31 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_32 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_33 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_34 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_35 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_36 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_37 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_38 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_39 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_40 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_41 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_42 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_43 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_44 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_45 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_46 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_47 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_48 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_49 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_50 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_51 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_52 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_53 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_54 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_55 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_56 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_57 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_58 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_59 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_60 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_61 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_62 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_63 | 1.0 | 0.0 | 1.0 |
| HNLJKBCP_67 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_73 | 0.0 | 1.0 | 0.0 |
| HNLJKBCP_74 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HNLJKBCP_5 | 63127 | 72572 | False | Siphoviridae | VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4553, VOG0204 |
| HNLJKBCP_23 | 178798 | 182224 | False | Siphoviridae | VOG4602, VOG9667, VOG6495, VOG11003, VOG6495, VOG0181 |
| HNLJKBCP_23 | 190155 | 217972 | False | Siphoviridae | VOG9295, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637, VOG0054 |
Phigaro v2.4.0 (Database: Jan. 2024 release)