Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIJCMEKJ_14 | 51892 | 53331 | AAC(6')-Ie-APH(2'')-Ia bifunctional protein | ARO:3002597 | AAC6_Ie_APH2_Ia | 100.00 | 100.00 | GU565967.1 |
| IIJCMEKJ_13 | 39196 | 41115 | tet(O) | ARO:3000190 | tet(O) | 97.81 | 100.00 | M18896.2 |
| IIJCMEKJ_13 | 37906 | 39144 | tet(40) | ARO:3000567 | tet(40) | 99.51 | 101.48 | AM419751.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IIJCMEKJ_14 | 51892 | 53331 | aac(6')-aph(2'') | Gentamicin, Tobramycin, Netilmicin, Kanamycin, Amikacin, Dibekacin, Isepamicin, Fortimicin, Streptomycin | 100.00 | 100.00 | M13771 |
| IIJCMEKJ_13 | 37906 | 39126 | tet(40) | Doxycycline, Tetracycline | 99.84 | 100.00 | AM419751 |
| IIJCMEKJ_13 | 39196 | 41115 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.17 | 100.00 | M20925 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIJCMEKJ_14 | 51892 | 53328 | aac(6')-Ie/aph(2'')-Ia | bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia | EXACTX | 100.00 | 100.00 | WP_001028144.1 |
| IIJCMEKJ_13 | 37909 | 39126 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_015573055.1 |
| IIJCMEKJ_13 | 39199 | 41115 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_063856405.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IIJCMEKJ_1 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_2 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_3 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_4 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_5 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_6 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_7 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_8 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_9 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_10 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_11 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_12 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_13 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_14 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_15 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_16 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_17 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_18 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_19 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_20 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_21 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_22 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_23 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_24 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_25 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_26 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_27 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_28 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_29 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_30 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_31 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_32 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_33 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_34 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_35 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_36 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_37 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_38 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_39 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_40 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_41 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_42 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_43 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_44 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_45 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_47 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_48 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_49 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_50 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_51 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_52 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_53 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_54 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_55 | 1.0 | 0.0 | 1.0 |
| IIJCMEKJ_56 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_57 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_66 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_67 | 0.0 | 1.0 | 0.0 |
| IIJCMEKJ_68 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IIJCMEKJ_12 | 100191 | 121259 | False | Siphoviridae | VOG0979, |
| IIJCMEKJ_13 | 10219 | 16079 | False | Siphoviridae | VOG3685, |
Phigaro v2.4.0 (Database: Jan. 2024 release)