Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAAIFKMA_1 | 531203 | 531697 | dfrF | ARO:3002867 | dfrF | 100.00 | 100.00 | AF028812.1 |
| PAAIFKMA_15 | 106704 | 110264 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
| PAAIFKMA_17 | 88594 | 90513 | tet(W) | ARO:3000194 | tet(W) | 99.69 | 100.00 | AJ222769.3 |
| PAAIFKMA_6 | 618 | 1472 | ErmX | ARO:3000596 | ErmX | 87.32 | 100.00 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PAAIFKMA_17 | 88594 | 90513 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | DQ060146 |
| PAAIFKMA_6 | 710 | 1472 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 96.99 | 100.00 | X51472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAAIFKMA_1 | 531206 | 531697 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | EXACTX | 100.00 | 100.00 | WP_002322211.1 |
| PAAIFKMA_17 | 88594 | 90510 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_009305318.1 |
| PAAIFKMA_6 | 621 | 1472 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 96.48 | 100.00 | WP_011152925.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAAIFKMA_1 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_2 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_3 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_5 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_6 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_8 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_9 | 1.0 | 0.0 | 1.0 |
| PAAIFKMA_11 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_12 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_13 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_14 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_15 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_16 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_17 | 0.0 | 1.0 | 0.0 |
| PAAIFKMA_18 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAAIFKMA_1 | 2571 | 18540 | False | Siphoviridae | VOG4545, VOG9762, VOG4621, VOG1159, VOG1158, VOG1210, VOG4553, VOG4568, VOG4556, VOG4544, VOG0296, VOG2038 |
| PAAIFKMA_1 | 20945 | 26097 | False | Siphoviridae | VOG4636, VOG9438, VOG1243, VOG0226, VOG1309, VOG4600 |
Phigaro v2.4.0 (Database: Jan. 2024 release)