Probiotic potential risk score


ARGs VFs PGs PPRS
6006.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
NFALGMBP_1789093790298Mef(En2)ARO:3004659Mef(En2)99.50100.00AF251288.1
NFALGMBP_12528828529628ErmFARO:3000498ErmF98.50100.00M17124.1
NFALGMBP_2190521191429CblA-1ARO:3002999CblA-197.97102.03GQ343019.1
NFALGMBP_131735518320CfxA3ARO:3003003CfxA3100.00100.00AF472622.2
NFALGMBP_51003111977tet(Q)ARO:3000191tet(Q)97.8198.63Z21523.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
NFALGMBP_131735518320cfxA3Ampicillin100.00100.00AF472622
NFALGMBP_12528828529628erm(F)Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S99.50100.00M17808
NFALGMBP_51006511977tet(Q)Doxycycline, Tetracycline, Minocycline98.7599.33L33696

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
NFALGMBP_131735818320cfxA3extended-spectrum class A beta-lactamase CfxA3EXACTX100.00100.00WP_004348227.1
NFALGMBP_1789093790295mef(En2)macrolide efflux MFS transporter Mef(En2)BLASTX99.50100.00WP_063853729.1
NFALGMBP_1790323790832lnu(AN2)lincosamide nucleotidyltransferase Lnu(AN2)BLASTX99.41100.00WP_004308783.1
NFALGMBP_12528828529625erm(F)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)BLASTX98.87100.00WP_002682030.1
NFALGMBP_2190521191408cblACblA family class A beta-lactamaseBLASTX97.97100.00WP_005827792.1
NFALGMBP_51006411977tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX97.9699.53WP_063856407.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
NFALGMBP_2617412321repUS2584 / 68180.48BFU30316

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
NFALGMBP_10.01.00.0
NFALGMBP_20.01.00.0
NFALGMBP_30.01.00.0
NFALGMBP_41.00.01.0
NFALGMBP_50.01.00.0
NFALGMBP_60.01.00.0
NFALGMBP_70.01.00.0
NFALGMBP_80.01.00.0
NFALGMBP_90.01.00.0
NFALGMBP_100.01.00.0
NFALGMBP_110.01.00.0
NFALGMBP_120.01.00.0
NFALGMBP_130.01.00.0
NFALGMBP_140.01.00.0
NFALGMBP_151.00.01.0
NFALGMBP_160.01.00.0
NFALGMBP_171.00.01.0
NFALGMBP_181.00.01.0
NFALGMBP_191.00.01.0
NFALGMBP_200.01.00.0
NFALGMBP_211.00.01.0
NFALGMBP_230.01.00.0
NFALGMBP_241.00.01.0
NFALGMBP_251.00.01.0
NFALGMBP_261.00.01.0
NFALGMBP_271.00.01.0
NFALGMBP_280.01.00.0
NFALGMBP_290.01.00.0
NFALGMBP_300.01.00.0
NFALGMBP_311.00.01.0
NFALGMBP_321.00.01.0
NFALGMBP_331.00.01.0
NFALGMBP_340.01.00.0
NFALGMBP_350.01.00.0
NFALGMBP_361.00.01.0
NFALGMBP_371.00.01.0
NFALGMBP_391.00.01.0
NFALGMBP_401.00.01.0
NFALGMBP_411.00.01.0
NFALGMBP_420.01.00.0
NFALGMBP_450.01.00.0
NFALGMBP_560.01.00.0
NFALGMBP_670.01.00.0
NFALGMBP_680.01.00.0
NFALGMBP_690.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
NFALGMBP_12519528532177FalseSiphoviridaeVOG6280,

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements