Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FIGAMMME_45 | 244671 | 246596 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| FIGAMMME_45 | 243584 | 244384 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FIGAMMME_45 | 243584 | 244384 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| FIGAMMME_45 | 244671 | 246596 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FIGAMMME_45 | 243584 | 244381 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| FIGAMMME_45 | 244671 | 246593 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FIGAMMME_12 | 149854 | 148274 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FIGAMMME_1 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_2 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_3 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_4 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_5 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_6 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_7 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_8 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_9 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_10 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_11 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_12 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_13 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_14 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_15 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_16 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_17 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_18 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_19 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_20 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_21 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_22 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_23 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_24 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_25 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_26 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_27 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_28 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_29 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_30 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_31 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_32 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_33 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_34 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_35 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_36 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_37 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_38 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_39 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_40 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_41 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_42 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_43 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_45 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_46 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_47 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_48 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_49 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_50 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_51 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_52 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_53 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_54 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_55 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_56 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_57 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_58 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_59 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_60 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_61 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_62 | 1.0 | 0.0 | 1.0 |
| FIGAMMME_63 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_67 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_73 | 0.0 | 1.0 | 0.0 |
| FIGAMMME_74 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FIGAMMME_8 | 98759 | 101193 | False | Siphoviridae | VOG4609, |
| FIGAMMME_23 | 247044 | 251264 | False | Myoviridae | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)