Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IFEFHCLL_13 | 95808 | 96608 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| IFEFHCLL_14 | 78489 | 80414 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IFEFHCLL_14 | 78489 | 80414 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| IFEFHCLL_13 | 95808 | 96608 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IFEFHCLL_14 | 78492 | 80414 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| IFEFHCLL_13 | 95811 | 96608 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IFEFHCLL_1 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_2 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_3 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_4 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_5 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_6 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_7 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_8 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_9 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_10 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_11 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_12 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_13 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_14 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_15 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_16 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_17 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_18 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_19 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_20 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_21 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_22 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_23 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_24 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_25 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_26 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_27 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_28 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_29 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_30 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_31 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_32 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_33 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_34 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_35 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_36 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_37 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_38 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_39 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_40 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_41 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_42 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_43 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_44 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_45 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_46 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_47 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_48 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_49 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_50 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_51 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_52 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_53 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_54 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_55 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_56 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_57 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_58 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_59 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_60 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_61 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_62 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_63 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_64 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_65 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_66 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_67 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_68 | 1.0 | 0.0 | 1.0 |
| IFEFHCLL_69 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_73 | 0.0 | 1.0 | 0.0 |
| IFEFHCLL_74 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IFEFHCLL_1 | 568622 | 572887 | False | Unknown | VOG0094, |
| IFEFHCLL_18 | 13200 | 20744 | False | Siphoviridae | VOG7238, |
| IFEFHCLL_73 | 28576 | 33056 | False | Unknown | VOG8584, |
Phigaro v2.4.0 (Database: Jan. 2024 release)