Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHAGEKHO_12 | 513387 | 514289 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| JHAGEKHO_23 | 501118 | 503043 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
| JHAGEKHO_42 | 401474 | 402274 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JHAGEKHO_12 | 513387 | 514289 | cepA | Unknown Beta-lactam | 99.56 | 100.00 | FR688022 |
| JHAGEKHO_42 | 401474 | 402274 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| JHAGEKHO_23 | 501118 | 503043 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHAGEKHO_12 | 513387 | 514286 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| JHAGEKHO_42 | 401477 | 402274 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| JHAGEKHO_23 | 501118 | 503040 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JHAGEKHO_1 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_2 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_3 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_4 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_5 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_6 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_7 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_8 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_9 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_10 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_11 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_12 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_13 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_14 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_15 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_16 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_17 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_18 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_19 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_20 | 1.0 | 0.0 | 1.0 |
| JHAGEKHO_21 | 1.0 | 0.0 | 1.0 |
| JHAGEKHO_22 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_23 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_24 | 1.0 | 0.0 | 1.0 |
| JHAGEKHO_25 | 1.0 | 0.0 | 1.0 |
| JHAGEKHO_26 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_27 | 1.0 | 0.0 | 1.0 |
| JHAGEKHO_29 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_30 | 1.0 | 0.0 | 1.0 |
| JHAGEKHO_34 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_42 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_43 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_44 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_45 | 0.0 | 1.0 | 0.0 |
| JHAGEKHO_46 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JHAGEKHO_16 | 6998 | 11145 | False | Siphoviridae | VOG4589, |
Phigaro v2.4.0 (Database: Jan. 2024 release)