Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JONIPBOB_6 | 253850 | 257533 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| JONIPBOB_4 | 27783 | 31109 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.64 | 100.09 | CP001840.1 |
| JONIPBOB_11 | 778 | 1632 | ErmX | ARO:3000596 | ErmX | 90.14 | 100.00 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JONIPBOB_6 | 267845 | 269763 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.95 | 99.95 | DQ060146 |
| JONIPBOB_11 | 870 | 1632 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.74 | 100.00 | U21300 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JONIPBOB_11 | 781 | 1632 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 99.65 | 100.00 | WP_011117480.1 |
| JONIPBOB_6 | 267848 | 269032 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | PARTIALX | 100.00 | 61.82 | WP_009305318.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JONIPBOB_1 | 0.0 | 1.0 | 0.0 |
| JONIPBOB_2 | 1.0 | 0.0 | 1.0 |
| JONIPBOB_3 | 1.0 | 0.0 | 1.0 |
| JONIPBOB_4 | 0.0 | 1.0 | 0.0 |
| JONIPBOB_5 | 0.0 | 1.0 | 0.0 |
| JONIPBOB_6 | 0.0 | 1.0 | 0.0 |
| JONIPBOB_7 | 0.0 | 1.0 | 0.0 |
| JONIPBOB_8 | 1.0 | 0.0 | 1.0 |
| JONIPBOB_9 | 0.0 | 1.0 | 0.0 |
| JONIPBOB_10 | 0.0 | 1.0 | 0.0 |
| JONIPBOB_11 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JONIPBOB_1 | 330331 | 355445 | False | Siphoviridae | VOG5782, VOG0943, VOG2538, VOG2038, VOG4841, VOG9852, VOG2560, VOG5101, VOG0720, VOG4576, VOG4553, VOG0880, VOG1581, VOG5601, VOG6163, VOG4605, VOG4599, VOG0933, VOG0991, VOG0136 |
| JONIPBOB_1 | 617753 | 622147 | False | Siphoviridae | VOG4602, VOG0010, VOG3304, VOG0585 |
| JONIPBOB_7 | 11690 | 33904 | False | Myoviridae | VOG2484, VOG0384, VOG4548, VOG11016, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
| JONIPBOB_8 | 26431 | 37980 | False | Myoviridae / Siphoviridae | VOG0444, VOG0705, VOG7442, VOG0705, VOG2577, VOG0021 |
| JONIPBOB_8 | 56876 | 65323 | False | Siphoviridae | VOG0157, VOG4679, VOG5774, VOG3189, VOG2545, VOG9667, VOG4573 |
Phigaro v2.4.0 (Database: Jan. 2024 release)