Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FGAFPGFD_15 | 64808 | 68368 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
| FGAFPGFD_8 | 326 | 1222 | ErmX | ARO:3000596 | ErmX | 86.83 | 104.93 | M36726.1 |
| FGAFPGFD_18 | 28484 | 29683 | tet(W) | ARO:3000194 | tet(W) | 99.00 | 62.44 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FGAFPGFD_18 | 27763 | 29683 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | DQ060146 |
| FGAFPGFD_8 | 326 | 1088 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 96.99 | 100.00 | X51472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FGAFPGFD_8 | 326 | 1168 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 96.09 | 98.94 | WP_011152925.1 |
| FGAFPGFD_18 | 28469 | 29680 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | PARTIALX | 98.27 | 63.22 | WP_009305318.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FGAFPGFD_1 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_2 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_3 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_4 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_5 | 1.0 | 0.0 | 1.0 |
| FGAFPGFD_6 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_7 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_8 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_9 | 1.0 | 0.0 | 1.0 |
| FGAFPGFD_11 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_12 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_13 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_14 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_15 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_16 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_17 | 0.0 | 1.0 | 0.0 |
| FGAFPGFD_18 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FGAFPGFD_1 | 524625 | 532902 | False | Unknown | VOG9667, VOG10195, VOG0275, VOG4606, VOG0822 |
| FGAFPGFD_12 | 12099 | 14557 | False | Siphoviridae | VOG10646, VOG2545 |
Phigaro v2.4.0 (Database: Jan. 2024 release)