Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKHHKEIA_24 | 79764 | 80525 | ErmG | ARO:3000522 | ErmG | 95.65 | 103.69 | L42817.1 |
| LKHHKEIA_108 | 73556 | 75481 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LKHHKEIA_108 | 73556 | 75481 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| LKHHKEIA_24 | 79764 | 80445 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.27 | 92.79 | M15332 |
| LKHHKEIA_24 | 77980 | 78992 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.53 | 69.19 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKHHKEIA_108 | 73559 | 75481 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LKHHKEIA_24 | 79764 | 80522 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 96.05 | 100.00 | WP_063844791.1 |
| LKHHKEIA_24 | 77979 | 78989 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | PARTIALX | 96.44 | 69.20 | WP_000420317.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKHHKEIA_1 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_2 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_3 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_4 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_5 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_6 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_7 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_8 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_9 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_10 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_11 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_12 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_13 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_14 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_15 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_16 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_17 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_18 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_19 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_20 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_21 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_22 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_23 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_24 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_25 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_26 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_27 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_28 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_29 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_35 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_36 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_37 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_38 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_39 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_40 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_41 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_42 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_43 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_44 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_45 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_46 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_47 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_48 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_49 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_50 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_51 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_52 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_53 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_54 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_55 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_56 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_57 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_58 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_59 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_60 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_61 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_62 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_63 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_64 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_65 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_66 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_67 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_68 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_69 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_70 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_71 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_72 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_73 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_74 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_75 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_76 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_77 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_78 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_79 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_80 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_81 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_82 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_83 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_84 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_85 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_86 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_87 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_88 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_89 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_90 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_91 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_92 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_93 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_94 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_95 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_96 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_97 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_98 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_99 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_100 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_101 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_102 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_103 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_104 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_105 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_106 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_107 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_108 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_109 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_110 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_111 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_112 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_113 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_114 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_115 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_116 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_117 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_118 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_119 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_120 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_121 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_122 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_123 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_124 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_125 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_126 | 0.0 | 1.0 | 0.0 |
| LKHHKEIA_127 | 1.0 | 0.0 | 1.0 |
| LKHHKEIA_128 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKHHKEIA_104 | 11032 | 16955 | False | Siphoviridae | VOG8171, |
Phigaro v2.4.0 (Database: Jan. 2024 release)