Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDPGDPKO_10 | 117638 | 121198 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
| BDPGDPKO_1 | 100048 | 101967 | tet(W) | ARO:3000194 | tet(W) | 98.28 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BDPGDPKO_1 | 100048 | 101967 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.91 | 100.00 | AJ427422 |
| BDPGDPKO_2 | 982 | 1744 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 96.99 | 100.00 | X51472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDPGDPKO_1 | 100048 | 101964 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 100.00 | WP_063856423.1 |
| BDPGDPKO_2 | 893 | 1744 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 96.48 | 100.00 | WP_011152925.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BDPGDPKO_1 | 0.0 | 1.0 | 0.0 |
| BDPGDPKO_2 | 1.0 | 0.0 | 1.0 |
| BDPGDPKO_3 | 0.0 | 1.0 | 0.0 |
| BDPGDPKO_4 | 0.0 | 1.0 | 0.0 |
| BDPGDPKO_7 | 0.0 | 1.0 | 0.0 |
| BDPGDPKO_8 | 0.0 | 1.0 | 0.0 |
| BDPGDPKO_9 | 0.0 | 1.0 | 0.0 |
| BDPGDPKO_10 | 0.0 | 1.0 | 0.0 |
| BDPGDPKO_11 | 0.0 | 1.0 | 0.0 |
| BDPGDPKO_12 | 0.0 | 1.0 | 0.0 |
| BDPGDPKO_13 | 0.0 | 1.0 | 0.0 |
| BDPGDPKO_14 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BDPGDPKO_1 | 632577 | 637759 | False | Siphoviridae | VOG4600, VOG1309, VOG0226, VOG1243, VOG9438 |
| BDPGDPKO_1 | 640164 | 656109 | False | Siphoviridae | VOG2038, VOG0296, VOG4544, VOG4556, VOG4568, VOG4553, VOG1210, VOG1158, VOG1159, VOG4621, VOG9762 |
| BDPGDPKO_8 | 216762 | 226840 | True | Unknown | VOG0026, VOG0753, VOG2570, VOG0275, VOG0275 |
Phigaro v2.4.0 (Database: Jan. 2024 release)