Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DCHGIBAB_34 | 218241 | 219131 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| DCHGIBAB_15 | 23509 | 25483 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DCHGIBAB_15 | 23557 | 25482 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DCHGIBAB_34 | 218244 | 219131 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| DCHGIBAB_15 | 23557 | 25479 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DCHGIBAB_1 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_2 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_3 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_4 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_5 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_6 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_7 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_8 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_9 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_10 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_11 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_12 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_13 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_14 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_15 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_16 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_17 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_18 | 1.0 | 0.0 | 1.0 |
| DCHGIBAB_19 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_20 | 1.0 | 0.0 | 1.0 |
| DCHGIBAB_21 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_22 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_23 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_24 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_25 | 1.0 | 0.0 | 1.0 |
| DCHGIBAB_26 | 1.0 | 0.0 | 1.0 |
| DCHGIBAB_27 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_28 | 1.0 | 0.0 | 1.0 |
| DCHGIBAB_29 | 1.0 | 0.0 | 1.0 |
| DCHGIBAB_30 | 1.0 | 0.0 | 1.0 |
| DCHGIBAB_31 | 1.0 | 0.0 | 1.0 |
| DCHGIBAB_32 | 1.0 | 0.0 | 1.0 |
| DCHGIBAB_34 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_43 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_44 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_45 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_46 | 0.0 | 1.0 | 0.0 |
| DCHGIBAB_47 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DCHGIBAB_12 | 39043 | 46383 | False | Unknown | VOG4571, |
| DCHGIBAB_46 | 22334 | 24784 | True | Siphoviridae | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)