Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGFOIMCL_124 | 79099 | 81018 | tet(O) | ARO:3000190 | tet(O) | 98.28 | 100.00 | M18896.2 |
| CGFOIMCL_107 | 104 | 571 | dfrF | ARO:3002867 | dfrF | 100.00 | 95.12 | AF028812.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGFOIMCL_124 | 79099 | 81018 | tet(O) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGFOIMCL_124 | 79099 | 81015 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | EXACTX | 100.00 | 100.00 | WP_000691759.1 |
| CGFOIMCL_107 | 104 | 571 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | BLASTX | 100.00 | 95.12 | WP_002322211.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGFOIMCL_1 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_2 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_3 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_4 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_5 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_6 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_7 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_8 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_9 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_10 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_11 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_12 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_13 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_14 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_15 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_16 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_17 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_18 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_19 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_20 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_21 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_22 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_23 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_24 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_25 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_26 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_27 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_28 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_29 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_30 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_31 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_32 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_33 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_34 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_35 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_36 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_37 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_38 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_39 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_40 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_41 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_43 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_44 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_45 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_46 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_47 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_48 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_49 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_50 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_51 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_53 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_54 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_56 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_57 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_58 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_59 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_60 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_61 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_62 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_63 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_64 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_65 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_66 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_67 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_68 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_69 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_70 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_72 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_73 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_74 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_76 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_77 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_78 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_79 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_82 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_83 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_84 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_86 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_87 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_89 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_90 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_91 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_101 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_112 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_113 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_115 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_116 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_117 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_118 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_119 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_120 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_121 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_122 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_123 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_124 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_125 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_126 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_127 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_128 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_129 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_130 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_131 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_132 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_133 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_134 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_135 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_136 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_137 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_138 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_139 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_140 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_141 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_142 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_143 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_144 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_145 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_146 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_147 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_148 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_149 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_150 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_151 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_152 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_153 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_154 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_155 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_156 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_157 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_158 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_159 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_160 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_161 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_162 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_163 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_164 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_165 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_166 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_167 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_168 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_169 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_170 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_171 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_172 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_173 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_174 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_175 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_176 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_177 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_178 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_179 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_180 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_181 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_182 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_183 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_184 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_185 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_186 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_187 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_188 | 1.0 | 0.0 | 1.0 |
| CGFOIMCL_189 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_190 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_191 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_192 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_193 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_194 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_195 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_196 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_197 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_198 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_199 | 0.0 | 1.0 | 0.0 |
| CGFOIMCL_200 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGFOIMCL_90 | 5069 | 19359 | False | Siphoviridae | VOG4556, |
| CGFOIMCL_90 | 40782 | 46181 | False | Siphoviridae | VOG4600, |
| CGFOIMCL_126 | 6824 | 10587 | False | Siphoviridae | VOG0612, |
| CGFOIMCL_143 | 939 | 21205 | False | Siphoviridae | VOG4544, |
Phigaro v2.4.0 (Database: Jan. 2024 release)