Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NADHPLIE_42 | 88305 | 90014 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 89.05 | AJ222769.3 |
| NADHPLIE_17 | 19771 | 23097 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.55 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NADHPLIE_42 | 88096 | 90014 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.95 | 99.95 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NADHPLIE_42 | 88356 | 90014 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | PARTIALX | 100.00 | 86.54 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NADHPLIE_1 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_2 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_3 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_4 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_5 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_6 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_7 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_8 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_9 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_10 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_11 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_12 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_13 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_14 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_15 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_16 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_17 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_18 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_19 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_20 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_21 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_22 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_23 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_24 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_25 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_26 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_27 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_28 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_29 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_30 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_31 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_32 | 1.0 | 0.0 | 1.0 |
| NADHPLIE_33 | 1.0 | 0.0 | 1.0 |
| NADHPLIE_34 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_35 | 1.0 | 0.0 | 1.0 |
| NADHPLIE_36 | 1.0 | 0.0 | 1.0 |
| NADHPLIE_37 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_38 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_39 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_42 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_43 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_44 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_45 | 0.0 | 1.0 | 0.0 |
| NADHPLIE_46 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NADHPLIE_18 | 20364 | 25688 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585 |
| NADHPLIE_43 | 4984 | 5842 | False | Unknown | VOG0275 |
Phigaro v2.4.0 (Database: Jan. 2024 release)