Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPKOMENI_1 | 529789 | 531714 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| JPKOMENI_45 | 116774 | 117979 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JPKOMENI_1 | 529789 | 531714 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| JPKOMENI_68 | 2980 | 3776 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 91.47 | 99.50 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPKOMENI_45 | 116240 | 116749 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| JPKOMENI_1 | 529789 | 531711 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| JPKOMENI_45 | 116777 | 117979 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| JPKOMENI_68 | 2980 | 3777 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 89.85 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JPKOMENI_68 | 16323 | 15193 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.80 | 69.17 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JPKOMENI_1 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_2 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_3 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_4 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_5 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_6 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_7 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_8 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_9 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_10 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_11 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_12 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_13 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_14 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_15 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_16 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_17 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_18 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_19 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_20 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_21 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_22 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_23 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_24 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_25 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_26 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_27 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_28 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_29 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_30 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_31 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_32 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_33 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_34 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_35 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_36 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_37 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_38 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_40 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_41 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_42 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_43 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_44 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_45 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_46 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_47 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_48 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_49 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_50 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_51 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_52 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_53 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_54 | 1.0 | 0.0 | 1.0 |
| JPKOMENI_56 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_67 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_68 | 0.0 | 1.0 | 0.0 |
| JPKOMENI_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JPKOMENI_9 | 90949 | 101609 | False | Siphoviridae | VOG7238, |
| JPKOMENI_11 | 73043 | 76082 | False | Myoviridae | VOG4564, |
| JPKOMENI_56 | 115918 | 124336 | False | Siphoviridae | VOG0720, |
Phigaro v2.4.0 (Database: Jan. 2024 release)