Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIOPMKED_34 | 57322 | 58056 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| JIOPMKED_115 | 32321 | 34295 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| JIOPMKED_82 | 2951 | 3841 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JIOPMKED_115 | 32321 | 34246 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| JIOPMKED_34 | 57322 | 58056 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | M15332 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIOPMKED_115 | 32324 | 34246 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| JIOPMKED_34 | 57325 | 58056 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_014387027.1 |
| JIOPMKED_82 | 2954 | 3841 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JIOPMKED_1 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_2 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_13 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_24 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_31 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_32 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_33 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_34 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_35 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_36 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_37 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_38 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_39 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_40 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_41 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_42 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_43 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_44 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_45 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_46 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_47 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_48 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_49 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_50 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_51 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_52 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_53 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_54 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_55 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_56 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_57 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_58 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_59 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_60 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_61 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_62 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_63 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_64 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_65 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_66 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_67 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_68 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_69 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_70 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_71 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_72 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_73 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_74 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_75 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_76 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_77 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_78 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_79 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_80 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_81 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_82 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_83 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_84 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_85 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_86 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_87 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_88 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_89 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_90 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_91 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_92 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_93 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_94 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_95 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_96 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_97 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_98 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_99 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_100 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_101 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_102 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_103 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_104 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_105 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_106 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_107 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_108 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_109 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_110 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_111 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_112 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_113 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_114 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_115 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_116 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_117 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_118 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_119 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_120 | 1.0 | 0.0 | 1.0 |
| JIOPMKED_121 | 0.0 | 1.0 | 0.0 |
| JIOPMKED_122 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JIOPMKED_59 | 2013 | 12759 | False | Siphoviridae | VOG8072, |
| JIOPMKED_115 | 7291 | 24205 | True | Siphoviridae | VOG2703, |
Phigaro v2.4.0 (Database: Jan. 2024 release)