Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIBPMDEH_44 | 66788 | 68713 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| JIBPMDEH_8 | 53 | 868 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JIBPMDEH_8 | 53 | 868 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| JIBPMDEH_44 | 66788 | 68713 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIBPMDEH_8 | 56 | 868 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| JIBPMDEH_44 | 66791 | 68713 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JIBPMDEH_45 | 19833 | 18253 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JIBPMDEH_115 | 2246 | 2826 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JIBPMDEH_1 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_2 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_3 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_4 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_5 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_6 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_7 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_13 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_24 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_33 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_34 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_35 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_36 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_37 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_38 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_39 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_40 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_41 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_42 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_43 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_44 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_45 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_46 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_47 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_48 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_49 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_50 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_51 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_52 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_53 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_54 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_55 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_56 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_57 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_58 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_59 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_60 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_61 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_62 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_63 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_64 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_65 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_66 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_67 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_68 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_69 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_70 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_71 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_72 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_73 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_74 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_75 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_76 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_77 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_78 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_79 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_80 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_81 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_82 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_83 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_84 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_85 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_86 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_87 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_88 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_89 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_90 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_91 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_92 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_93 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_94 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_95 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_96 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_97 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_98 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_99 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_100 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_101 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_102 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_103 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_104 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_105 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_106 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_107 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_108 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_109 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_110 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_111 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_113 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_114 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_115 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_116 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_117 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_118 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_119 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_120 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_121 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_122 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_123 | 0.0 | 1.0 | 0.0 |
| JIBPMDEH_124 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_125 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_126 | 1.0 | 0.0 | 1.0 |
| JIBPMDEH_127 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)