Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLJKAMAC_26 | 43479 | 45404 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GLJKAMAC_55 | 19602 | 20447 | ErmF | ARO:3000498 | ErmF | 98.50 | 105.64 | M17124.1 |
| GLJKAMAC_55 | 17390 | 19315 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GLJKAMAC_26 | 43479 | 45404 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GLJKAMAC_55 | 19602 | 20402 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLJKAMAC_26 | 43482 | 45404 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GLJKAMAC_55 | 19605 | 20402 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| GLJKAMAC_55 | 17393 | 19315 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GLJKAMAC_1 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_2 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_9 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_10 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_11 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_12 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_13 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_14 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_15 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_16 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_17 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_18 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_19 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_20 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_21 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_22 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_23 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_24 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_25 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_26 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_27 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_28 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_29 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_30 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_31 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_32 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_33 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_34 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_35 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_36 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_37 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_38 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_39 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_40 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_41 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_42 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_43 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_44 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_45 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_46 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_47 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_48 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_49 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_50 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_51 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_52 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_53 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_54 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_55 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_56 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_57 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_58 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_59 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_60 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_61 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_62 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_63 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_64 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_65 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_66 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_67 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_68 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_69 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_70 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_71 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_72 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_73 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_74 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_75 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_76 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_77 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_78 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_79 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_80 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_81 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_82 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_83 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_84 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_85 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_86 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_87 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_88 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_89 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_90 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_91 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_92 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_93 | 0.0 | 1.0 | 0.0 |
| GLJKAMAC_94 | 1.0 | 0.0 | 1.0 |
| GLJKAMAC_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GLJKAMAC_15 | 47362 | 51842 | False | Unknown | VOG8584, |
| GLJKAMAC_15 | 69574 | 76375 | False | Unknown | VOG0796, |
| GLJKAMAC_84 | 35947 | 45530 | False | Myoviridae | VOG0569, |
Phigaro v2.4.0 (Database: Jan. 2024 release)