Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HGFFJGFI_12 | 157643 | 158608 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| HGFFJGFI_26 | 16495 | 18156 | tet(Q) | ARO:3000191 | tet(Q) | 95.84 | 84.17 | Z21523.1 |
| HGFFJGFI_28 | 14576 | 16237 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 84.17 | Z21523.1 |
| HGFFJGFI_30 | 3643 | 4500 | ErmF | ARO:3000498 | ErmF | 98.50 | 107.14 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HGFFJGFI_12 | 157643 | 158608 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| HGFFJGFI_28 | 14576 | 16237 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 86.29 | Z21523 |
| HGFFJGFI_30 | 3643 | 4443 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HGFFJGFI_12 | 157646 | 158608 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| HGFFJGFI_28 | 14579 | 16237 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 100.00 | 86.27 | WP_002560998.1 |
| HGFFJGFI_26 | 16498 | 18156 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.46 | 86.27 | WP_063856407.1 |
| HGFFJGFI_30 | 3646 | 4443 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HGFFJGFI_4 | 111954 | 113534 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HGFFJGFI_1 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_2 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_3 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_4 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_5 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_6 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_7 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_8 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_9 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_10 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_11 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_12 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_13 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_14 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_15 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_16 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_17 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_18 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_19 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_20 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_21 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_22 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_23 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_24 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_25 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_26 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_27 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_28 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_29 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_30 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_31 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_32 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_33 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_34 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_35 | 1.0 | 0.0 | 1.0 |
| HGFFJGFI_36 | 1.0 | 0.0 | 1.0 |
| HGFFJGFI_37 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_38 | 1.0 | 0.0 | 1.0 |
| HGFFJGFI_39 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_40 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_41 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_42 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_43 | 1.0 | 0.0 | 1.0 |
| HGFFJGFI_44 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_45 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_54 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_55 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_56 | 0.0 | 1.0 | 0.0 |
| HGFFJGFI_57 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)