Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GOIBCMPC_12 | 202573 | 206133 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.40 | 100.00 | NC_008618.1 |
| GOIBCMPC_7 | 326 | 1180 | ErmX | ARO:3000596 | ErmX | 87.32 | 100.00 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GOIBCMPC_7 | 326 | 1088 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 96.99 | 100.00 | X51472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GOIBCMPC_7 | 326 | 1177 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 96.48 | 100.00 | WP_011152925.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GOIBCMPC_1 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_2 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_3 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_4 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_5 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_6 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_7 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_8 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_9 | 1.0 | 0.0 | 1.0 |
| GOIBCMPC_11 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_12 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_13 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_14 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_15 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_16 | 0.0 | 1.0 | 0.0 |
| GOIBCMPC_17 | 1.0 | 0.0 | 1.0 |
| GOIBCMPC_18 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GOIBCMPC_12 | 46725 | 55019 | False | Siphoviridae | VOG4556, VOG4568, VOG5587, VOG5589, VOG5793 |
| GOIBCMPC_13 | 12477 | 24411 | False | Siphoviridae | VOG1887, VOG3434, VOG9853, VOG2806, VOG0720, VOG5101, VOG1574, VOG6459, VOG4841 |
| GOIBCMPC_13 | 42758 | 51040 | False | Myoviridae / Siphoviridae | VOG0085, VOG5782, VOG2666, VOG8271, VOG1243, VOG0226, VOG1309, VOG7145, VOG0686 |
| GOIBCMPC_13 | 180273 | 210121 | False | Siphoviridae | VOG0944, VOG0731, VOG9502, VOG0275, VOG5361, VOG5361, VOG5361, VOG3653, VOG4545, VOG4557, VOG4589, VOG1581, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1154, VOG2038 |
Phigaro v2.4.0 (Database: Jan. 2024 release)