Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNCOCPKN_9 | 64150 | 66069 | tet(O) | ARO:3000190 | tet(O) | 98.44 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PNCOCPKN_9 | 64150 | 66069 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | M20925 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNCOCPKN_9 | 64153 | 66069 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_014636291.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PNCOCPKN_1 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_2 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_3 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_4 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_5 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_6 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_7 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_8 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_9 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_10 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_11 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_12 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_13 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_14 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_15 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_16 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_17 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_18 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_19 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_20 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_21 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_22 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_23 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_24 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_25 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_26 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_27 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_28 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_29 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_30 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_31 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_32 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_33 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_34 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_35 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_36 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_37 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_38 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_39 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_40 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_41 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_42 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_43 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_44 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_45 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_46 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_47 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_48 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_49 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_51 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_52 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_53 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_54 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_55 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_56 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_57 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_58 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_60 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_61 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_63 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_64 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_65 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_66 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_67 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_68 | 1.0 | 0.0 | 1.0 |
| PNCOCPKN_70 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_71 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_78 | 0.0 | 1.0 | 0.0 |
| PNCOCPKN_81 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PNCOCPKN_34 | 277513 | 297952 | False | Myoviridae | VOG4565, |
Phigaro v2.4.0 (Database: Jan. 2024 release)