Probiotic potential risk score


ARGs VFs PGs PPRS
4014.12

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
LCELFIDJ_1384880386826tet(Q)ARO:3000191tet(Q)99.8498.63Z21523.1
LCELFIDJ_57668477484ErmFARO:3000498ErmF98.50100.00M17124.1
LCELFIDJ_5128034788tet(Q)ARO:3000191tet(Q)93.34100.61Z21523.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
LCELFIDJ_1384880386792tet(Q)Doxycycline, Tetracycline, Minocycline100.0099.33Z21523
LCELFIDJ_57668477484erm(F)Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S99.50100.00M17808
LCELFIDJ_511081325mef(A)Erythromycin, Azithromycin94.99100.00AF227520

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
LCELFIDJ_1384880386793tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX99.8499.53WP_002560998.1
LCELFIDJ_57668477481erm(F)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)BLASTX98.87100.00WP_002682030.1
LCELFIDJ_511081328mef(A)macrolide efflux MFS transporter Mef(A)INTERNAL_STOP98.5399.75WP_012102963.1
LCELFIDJ_5128034785tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX96.22100.00WP_063856407.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
LCELFIDJ_453154333123GroEL0.0folding of newly synthesized proteins, preventing misfolding and aggregation86.9196.70BAA04222

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
LCELFIDJ_10.01.00.0
LCELFIDJ_20.01.00.0
LCELFIDJ_30.01.00.0
LCELFIDJ_40.01.00.0
LCELFIDJ_50.01.00.0
LCELFIDJ_60.01.00.0
LCELFIDJ_70.01.00.0
LCELFIDJ_80.01.00.0
LCELFIDJ_90.01.00.0
LCELFIDJ_100.01.00.0
LCELFIDJ_110.01.00.0
LCELFIDJ_120.01.00.0
LCELFIDJ_130.01.00.0
LCELFIDJ_140.01.00.0
LCELFIDJ_151.00.01.0
LCELFIDJ_160.01.00.0
LCELFIDJ_170.01.00.0
LCELFIDJ_180.01.00.0
LCELFIDJ_191.00.01.0
LCELFIDJ_200.01.00.0
LCELFIDJ_210.01.00.0
LCELFIDJ_220.01.00.0
LCELFIDJ_230.01.00.0
LCELFIDJ_240.01.00.0
LCELFIDJ_250.01.00.0
LCELFIDJ_261.00.01.0
LCELFIDJ_270.01.00.0
LCELFIDJ_280.01.00.0
LCELFIDJ_290.01.00.0
LCELFIDJ_300.01.00.0
LCELFIDJ_311.00.01.0
LCELFIDJ_321.00.01.0
LCELFIDJ_330.01.00.0
LCELFIDJ_340.01.00.0
LCELFIDJ_350.01.00.0
LCELFIDJ_361.00.01.0
LCELFIDJ_370.01.00.0
LCELFIDJ_381.00.01.0
LCELFIDJ_391.00.01.0
LCELFIDJ_401.00.01.0
LCELFIDJ_411.00.01.0
LCELFIDJ_450.01.00.0
LCELFIDJ_480.01.00.0
LCELFIDJ_490.01.00.0
LCELFIDJ_500.01.00.0
LCELFIDJ_510.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
LCELFIDJ_34104805117900TrueSiphoviridaeVOG9190,

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements