Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HHPNJACM_38 | 277886 | 278788 | CepA-44 | ARO:3006225 | CepA-44 | 99.33 | 100.00 | NG_050386.1 |
| HHPNJACM_41 | 230039 | 231964 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| HHPNJACM_41 | 228952 | 229752 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| HHPNJACM_23 | 18195 | 20169 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HHPNJACM_23 | 18195 | 20120 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| HHPNJACM_38 | 277886 | 278788 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | U05887 |
| HHPNJACM_41 | 228952 | 229752 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HHPNJACM_23 | 18198 | 20120 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| HHPNJACM_38 | 277886 | 278785 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005816369.1 |
| HHPNJACM_41 | 228952 | 229749 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| HHPNJACM_41 | 230039 | 231961 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HHPNJACM_30 | 384 | 1063 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HHPNJACM_1 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_2 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_3 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_4 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_5 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_6 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_7 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_8 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_9 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_10 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_11 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_12 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_13 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_14 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_15 | 1.0 | 0.0 | 1.0 |
| HHPNJACM_16 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_17 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_18 | 1.0 | 0.0 | 1.0 |
| HHPNJACM_19 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_20 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_21 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_22 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_23 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_24 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_25 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_26 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_27 | 1.0 | 0.0 | 1.0 |
| HHPNJACM_28 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_29 | 1.0 | 0.0 | 1.0 |
| HHPNJACM_30 | 1.0 | 0.0 | 1.0 |
| HHPNJACM_31 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_32 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_33 | 1.0 | 0.0 | 1.0 |
| HHPNJACM_34 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_38 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_39 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_40 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_41 | 0.0 | 1.0 | 0.0 |
| HHPNJACM_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HHPNJACM_39 | 102605 | 112489 | False | Siphoviridae | VOG4556, |
Phigaro v2.4.0 (Database: Jan. 2024 release)