Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLLBCIMA_22 | 38272 | 39492 | tet(40) | ARO:3000567 | tet(40) | 98.52 | 100.00 | AM419751.1 |
| CLLBCIMA_22 | 36302 | 38221 | tet(O) | ARO:3000190 | tet(O) | 94.52 | 100.00 | M18896.2 |
| CLLBCIMA_18 | 35296 | 36033 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CLLBCIMA_18 | 35296 | 36033 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| CLLBCIMA_22 | 36302 | 38221 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | FP929050 |
| CLLBCIMA_22 | 38272 | 39492 | tet(40) | Doxycycline, Tetracycline | 99.59 | 100.00 | FJ158002 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLLBCIMA_18 | 35296 | 36030 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002292226.1 |
| CLLBCIMA_22 | 38272 | 39489 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.26 | 100.00 | WP_009247026.1 |
| CLLBCIMA_22 | 36302 | 38218 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 94.84 | 100.00 | WP_012669445.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CLLBCIMA_1 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_2 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_3 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_4 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_5 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_6 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_7 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_8 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_9 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_10 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_11 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_12 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_13 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_14 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_15 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_16 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_17 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_18 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_19 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_20 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_21 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_22 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_23 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_24 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_25 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_26 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_27 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_28 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_29 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_30 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_31 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_32 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_33 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_34 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_35 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_36 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_37 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_38 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_39 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_40 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_41 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_42 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_43 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_44 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_45 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_46 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_47 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_48 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_49 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_50 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_51 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_52 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_53 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_54 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_55 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_56 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_57 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_58 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_59 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_60 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_61 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_62 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_63 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_64 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_65 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_66 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_67 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_68 | 1.0 | 0.0 | 1.0 |
| CLLBCIMA_78 | 0.0 | 1.0 | 0.0 |
| CLLBCIMA_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CLLBCIMA_1 | 343201 | 360501 | False | Myoviridae | VOG4862, |
| CLLBCIMA_5 | 78556 | 97674 | False | Myoviridae | VOG4705, |
| CLLBCIMA_10 | 75289 | 83769 | False | Myoviridae | VOG2215, |
| CLLBCIMA_18 | 29361 | 38949 | False | Siphoviridae | VOG6495, |
| CLLBCIMA_56 | 138347 | 156984 | False | Siphoviridae | VOG4545, |
Phigaro v2.4.0 (Database: Jan. 2024 release)