Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPGAIPCF_55 | 10791 | 12710 | tet(O) | ARO:3000190 | tet(O) | 93.58 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GPGAIPCF_55 | 10791 | 12710 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.69 | 100.00 | AIOQ01000025 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPGAIPCF_55 | 10794 | 12710 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 93.90 | 100.00 | WP_012669445.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPGAIPCF_1 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_2 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_3 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_4 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_5 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_6 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_7 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_8 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_9 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_10 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_11 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_12 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_13 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_15 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_16 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_17 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_18 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_19 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_20 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_21 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_22 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_23 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_24 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_25 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_26 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_28 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_29 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_30 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_31 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_35 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_40 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_41 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_42 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_43 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_44 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_45 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_46 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_47 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_48 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_49 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_50 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_51 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_52 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_53 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_54 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_55 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_56 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_57 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_58 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_59 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_60 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_61 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_62 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_63 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_64 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_65 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_66 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_67 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_68 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_69 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_70 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_71 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_72 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_73 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_74 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_75 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_76 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_77 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_78 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_79 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_80 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_81 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_82 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_83 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_84 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_85 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_86 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_87 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_88 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_89 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_90 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_91 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_92 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_93 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_94 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_95 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_96 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_97 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_98 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_99 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_100 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_101 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_102 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_103 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_104 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_105 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_106 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_107 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_108 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_109 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_110 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_111 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_112 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_113 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_114 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_115 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_116 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_117 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_118 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_119 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_120 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_121 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_122 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_123 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_124 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_125 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_126 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_127 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_128 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_129 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_130 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_131 | 1.0 | 0.0 | 1.0 |
| GPGAIPCF_132 | 0.0 | 1.0 | 0.0 |
| GPGAIPCF_133 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GPGAIPCF_2 | 19750 | 26927 | False | Unknown | VOG6736, |
| GPGAIPCF_101 | 41299 | 58228 | False | Siphoviridae | VOG4599, |
Phigaro v2.4.0 (Database: Jan. 2024 release)