Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PPMECFNC_43 | 3566 | 4429 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| PPMECFNC_43 | 2254 | 3390 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| PPMECFNC_43 | 916 | 2055 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| PPMECFNC_27 | 67 | 1032 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
| PPMECFNC_68 | 2 | 1669 | tet(Q) | ARO:3000191 | tet(Q) | 95.86 | 84.47 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PPMECFNC_27 | 67 | 1032 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| PPMECFNC_68 | 1 | 1669 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.82 | 86.66 | L33696 |
| PPMECFNC_43 | 2224 | 3390 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
| PPMECFNC_43 | 52 | 610 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.82 | 69.79 | M62487 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PPMECFNC_43 | 3566 | 4426 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| PPMECFNC_27 | 67 | 1029 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| PPMECFNC_43 | 916 | 2052 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| PPMECFNC_43 | 2224 | 3387 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| PPMECFNC_68 | 2 | 1666 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.46 | 86.58 | WP_063856407.1 |
| PPMECFNC_43 | 53 | 610 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 99.46 | 69.92 | WP_063844771.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PPMECFNC_2 | 72902 | 74482 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PPMECFNC_1 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_2 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_3 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_4 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_5 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_6 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_7 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_8 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_9 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_10 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_11 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_12 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_13 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_14 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_15 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_16 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_17 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_18 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_19 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_20 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_21 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_22 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_23 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_24 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_25 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_26 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_27 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_28 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_29 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_30 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_31 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_32 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_33 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_34 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_35 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_36 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_37 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_38 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_39 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_40 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_41 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_42 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_43 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_44 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_45 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_46 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_47 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_48 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_49 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_50 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_51 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_52 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_53 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_54 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_55 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_56 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_57 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_58 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_59 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_60 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_61 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_62 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_63 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_64 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_65 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_66 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_67 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_68 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_69 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_70 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_71 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_72 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_73 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_74 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_75 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_76 | 1.0 | 0.0 | 1.0 |
| PPMECFNC_78 | 0.0 | 1.0 | 0.0 |
| PPMECFNC_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PPMECFNC_11 | 102490 | 105486 | False | Myoviridae | VOG4552, |
| PPMECFNC_12 | 2685 | 11116 | False | Siphoviridae | VOG4581, |
| PPMECFNC_12 | 175407 | 181306 | False | Unknown | VOG4548, |
| PPMECFNC_15 | 33895 | 41744 | False | Siphoviridae | VOG7238, |
| PPMECFNC_32 | 40972 | 44480 | False | Unknown | VOG7407, |
Phigaro v2.4.0 (Database: Jan. 2024 release)