Probiotic potential risk score


ARGs VFs PGs PPRS
4014.12

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
GCEHKMMO_26942611351tet(Q)ARO:3000191tet(Q)96.4197.56Z21523.1
GCEHKMMO_4911393064tet(Q)ARO:3000191tet(Q)89.0897.56Z21523.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
GCEHKMMO_26942611351tet(Q)Doxycycline, Tetracycline, Minocycline99.84100.00L33696
GCEHKMMO_4953852erm(F)Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S99.2599.88M17808

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
GCEHKMMO_26942611348tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX99.53100.00WP_063856407.1
GCEHKMMO_49244849erm(F)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)PARTIALX98.5175.94WP_002682030.1
GCEHKMMO_4911393061tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX89.55100.00WP_063856407.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
GCEHKMMO_241228310703GroEL0.0folding of newly synthesized proteins, preventing misfolding and aggregation86.9196.70BAA04222

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
GCEHKMMO_10.01.00.0
GCEHKMMO_20.01.00.0
GCEHKMMO_30.01.00.0
GCEHKMMO_40.01.00.0
GCEHKMMO_50.01.00.0
GCEHKMMO_60.01.00.0
GCEHKMMO_71.00.01.0
GCEHKMMO_80.01.00.0
GCEHKMMO_90.01.00.0
GCEHKMMO_100.01.00.0
GCEHKMMO_110.01.00.0
GCEHKMMO_120.01.00.0
GCEHKMMO_130.01.00.0
GCEHKMMO_140.01.00.0
GCEHKMMO_150.01.00.0
GCEHKMMO_161.00.01.0
GCEHKMMO_170.01.00.0
GCEHKMMO_180.01.00.0
GCEHKMMO_190.01.00.0
GCEHKMMO_200.01.00.0
GCEHKMMO_211.00.01.0
GCEHKMMO_220.01.00.0
GCEHKMMO_230.01.00.0
GCEHKMMO_240.01.00.0
GCEHKMMO_250.01.00.0
GCEHKMMO_260.01.00.0
GCEHKMMO_270.01.00.0
GCEHKMMO_280.01.00.0
GCEHKMMO_290.01.00.0
GCEHKMMO_301.00.01.0
GCEHKMMO_310.01.00.0
GCEHKMMO_320.01.00.0
GCEHKMMO_330.01.00.0
GCEHKMMO_340.01.00.0
GCEHKMMO_351.00.01.0
GCEHKMMO_361.00.01.0
GCEHKMMO_370.01.00.0
GCEHKMMO_380.01.00.0
GCEHKMMO_390.01.00.0
GCEHKMMO_401.00.01.0
GCEHKMMO_410.01.00.0
GCEHKMMO_421.00.01.0
GCEHKMMO_431.00.01.0
GCEHKMMO_441.00.01.0
GCEHKMMO_450.01.00.0
GCEHKMMO_461.00.01.0
GCEHKMMO_471.00.01.0
GCEHKMMO_480.01.00.0
GCEHKMMO_491.00.01.0
GCEHKMMO_501.00.01.0
GCEHKMMO_510.01.00.0
GCEHKMMO_520.01.00.0
GCEHKMMO_531.00.01.0
GCEHKMMO_541.00.01.0
GCEHKMMO_551.00.01.0
GCEHKMMO_560.01.00.0
GCEHKMMO_571.00.01.0
GCEHKMMO_581.00.01.0
GCEHKMMO_591.00.01.0
GCEHKMMO_601.00.01.0
GCEHKMMO_611.00.01.0
GCEHKMMO_621.00.01.0
GCEHKMMO_670.01.00.0
GCEHKMMO_680.01.00.0
GCEHKMMO_690.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
No hit found

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements