Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PBONODFP_45 | 102130 | 102834 | WalR | 6.27e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PBONODFP_28 | 26564 | 26370 | CspR | 3.11e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PBONODFP_28 | 26564 | 26367 | CspA | 4.76e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBONODFP_1 | 0.0 | 1.0 | 0.0 |
| PBONODFP_2 | 1.0 | 0.0 | 1.0 |
| PBONODFP_3 | 0.0 | 1.0 | 0.0 |
| PBONODFP_4 | 1.0 | 0.0 | 1.0 |
| PBONODFP_5 | 1.0 | 0.0 | 1.0 |
| PBONODFP_6 | 0.0 | 1.0 | 0.0 |
| PBONODFP_7 | 0.0 | 1.0 | 0.0 |
| PBONODFP_11 | 0.0 | 1.0 | 0.0 |
| PBONODFP_20 | 0.0 | 1.0 | 0.0 |
| PBONODFP_26 | 0.0 | 1.0 | 0.0 |
| PBONODFP_27 | 0.0 | 1.0 | 0.0 |
| PBONODFP_28 | 0.0 | 1.0 | 0.0 |
| PBONODFP_29 | 0.0 | 1.0 | 0.0 |
| PBONODFP_30 | 0.0 | 1.0 | 0.0 |
| PBONODFP_31 | 0.0 | 1.0 | 0.0 |
| PBONODFP_32 | 0.0 | 1.0 | 0.0 |
| PBONODFP_33 | 0.0 | 1.0 | 0.0 |
| PBONODFP_34 | 0.0 | 1.0 | 0.0 |
| PBONODFP_35 | 0.0 | 1.0 | 0.0 |
| PBONODFP_36 | 0.0 | 1.0 | 0.0 |
| PBONODFP_37 | 0.0 | 1.0 | 0.0 |
| PBONODFP_38 | 0.0 | 1.0 | 0.0 |
| PBONODFP_39 | 0.0 | 1.0 | 0.0 |
| PBONODFP_40 | 0.0 | 1.0 | 0.0 |
| PBONODFP_41 | 0.0 | 1.0 | 0.0 |
| PBONODFP_42 | 0.0 | 1.0 | 0.0 |
| PBONODFP_43 | 0.0 | 1.0 | 0.0 |
| PBONODFP_44 | 0.0 | 1.0 | 0.0 |
| PBONODFP_45 | 0.0 | 1.0 | 0.0 |
| PBONODFP_46 | 0.0 | 1.0 | 0.0 |
| PBONODFP_47 | 0.0 | 1.0 | 0.0 |
| PBONODFP_48 | 0.0 | 1.0 | 0.0 |
| PBONODFP_49 | 0.0 | 1.0 | 0.0 |
| PBONODFP_50 | 0.0 | 1.0 | 0.0 |
| PBONODFP_51 | 0.0 | 1.0 | 0.0 |
| PBONODFP_52 | 0.0 | 1.0 | 0.0 |
| PBONODFP_53 | 1.0 | 0.0 | 1.0 |
| PBONODFP_54 | 0.0 | 1.0 | 0.0 |
| PBONODFP_55 | 0.0 | 1.0 | 0.0 |
| PBONODFP_56 | 0.0 | 1.0 | 0.0 |
| PBONODFP_57 | 1.0 | 0.0 | 1.0 |
| PBONODFP_58 | 0.0 | 1.0 | 0.0 |
| PBONODFP_59 | 0.0 | 1.0 | 0.0 |
| PBONODFP_60 | 0.0 | 1.0 | 0.0 |
| PBONODFP_61 | 0.0 | 1.0 | 0.0 |
| PBONODFP_62 | 0.0 | 1.0 | 0.0 |
| PBONODFP_63 | 0.0 | 1.0 | 0.0 |
| PBONODFP_64 | 0.0 | 1.0 | 0.0 |
| PBONODFP_65 | 0.0 | 1.0 | 0.0 |
| PBONODFP_66 | 0.0 | 1.0 | 0.0 |
| PBONODFP_67 | 0.0 | 1.0 | 0.0 |
| PBONODFP_68 | 0.0 | 1.0 | 0.0 |
| PBONODFP_69 | 0.0 | 1.0 | 0.0 |
| PBONODFP_70 | 0.0 | 1.0 | 0.0 |
| PBONODFP_71 | 0.0 | 1.0 | 0.0 |
| PBONODFP_72 | 0.0 | 1.0 | 0.0 |
| PBONODFP_73 | 0.0 | 1.0 | 0.0 |
| PBONODFP_74 | 0.0 | 1.0 | 0.0 |
| PBONODFP_75 | 1.0 | 0.0 | 1.0 |
| PBONODFP_76 | 0.0 | 1.0 | 0.0 |
| PBONODFP_77 | 0.0 | 1.0 | 0.0 |
| PBONODFP_78 | 0.0 | 1.0 | 0.0 |
| PBONODFP_79 | 0.0 | 1.0 | 0.0 |
| PBONODFP_80 | 0.0 | 1.0 | 0.0 |
| PBONODFP_81 | 0.0 | 1.0 | 0.0 |
| PBONODFP_82 | 0.0 | 1.0 | 0.0 |
| PBONODFP_83 | 0.0 | 1.0 | 0.0 |
| PBONODFP_84 | 0.0 | 1.0 | 0.0 |
| PBONODFP_85 | 1.0 | 0.0 | 1.0 |
| PBONODFP_86 | 0.0 | 1.0 | 0.0 |
| PBONODFP_87 | 0.0 | 1.0 | 0.0 |
| PBONODFP_88 | 0.0 | 1.0 | 0.0 |
| PBONODFP_89 | 0.0 | 1.0 | 0.0 |
| PBONODFP_90 | 0.0 | 1.0 | 0.0 |
| PBONODFP_91 | 0.0 | 1.0 | 0.0 |
| PBONODFP_92 | 0.0 | 1.0 | 0.0 |
| PBONODFP_93 | 0.0 | 1.0 | 0.0 |
| PBONODFP_94 | 1.0 | 0.0 | 1.0 |
| PBONODFP_95 | 0.0 | 1.0 | 0.0 |
| PBONODFP_96 | 0.0 | 1.0 | 0.0 |
| PBONODFP_97 | 1.0 | 0.0 | 1.0 |
| PBONODFP_98 | 1.0 | 0.0 | 1.0 |
| PBONODFP_99 | 0.0 | 1.0 | 0.0 |
| PBONODFP_100 | 0.0 | 1.0 | 0.0 |
| PBONODFP_101 | 0.0 | 1.0 | 0.0 |
| PBONODFP_102 | 0.0 | 1.0 | 0.0 |
| PBONODFP_103 | 0.0 | 1.0 | 0.0 |
| PBONODFP_104 | 0.0 | 1.0 | 0.0 |
| PBONODFP_105 | 1.0 | 0.0 | 1.0 |
| PBONODFP_106 | 0.0 | 1.0 | 0.0 |
| PBONODFP_107 | 0.0 | 1.0 | 0.0 |
| PBONODFP_108 | 0.0 | 1.0 | 0.0 |
| PBONODFP_109 | 0.0 | 1.0 | 0.0 |
| PBONODFP_110 | 0.0 | 1.0 | 0.0 |
| PBONODFP_111 | 0.0 | 1.0 | 0.0 |
| PBONODFP_112 | 0.0 | 1.0 | 0.0 |
| PBONODFP_113 | 0.0 | 1.0 | 0.0 |
| PBONODFP_114 | 0.0 | 1.0 | 0.0 |
| PBONODFP_115 | 0.0 | 1.0 | 0.0 |
| PBONODFP_116 | 0.0 | 1.0 | 0.0 |
| PBONODFP_118 | 1.0 | 0.0 | 1.0 |
| PBONODFP_119 | 0.0 | 1.0 | 0.0 |
| PBONODFP_122 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBONODFP_44 | 5122 | 9960 | False | Siphoviridae | VOG4566, VOG0186, VOG1309, VOG7298, VOG0181 |
| PBONODFP_44 | 21031 | 27963 | False | Siphoviridae | VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205 |
| PBONODFP_56 | 45244 | 72520 | False | Siphoviridae | VOG4783, VOG8870, VOG10957, VOG4599, VOG4605, VOG4686, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)