Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MCPHANKI_21 | 4002 | 5921 | tet(W) | ARO:3000194 | tet(W) | 97.18 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MCPHANKI_21 | 4002 | 5921 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.11 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MCPHANKI_21 | 4002 | 5918 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MCPHANKI_10 | 140703 | 140509 | CspA | 1.40e-27 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MCPHANKI_2 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_4 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_5 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_6 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_8 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_9 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_10 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_11 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_13 | 1.0 | 0.0 | 1.0 |
| MCPHANKI_14 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_15 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_16 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_17 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_21 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_22 | 1.0 | 0.0 | 1.0 |
| MCPHANKI_29 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_31 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_36 | 1.0 | 0.0 | 1.0 |
| MCPHANKI_37 | 0.0 | 1.0 | 0.0 |
| MCPHANKI_38 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MCPHANKI_4 | 56646 | 83803 | False | Siphoviridae | VOG0703, VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG0083, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0866, VOG6183, VOG0198, VOG0686 |
| MCPHANKI_4 | 329304 | 361976 | False | Siphoviridae | VOG8294, VOG0641, VOG0648, VOG5007, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG3307, VOG1183, VOG5370, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
Phigaro v2.4.0 (Database: Jan. 2024 release)