Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LPJCLDEG_2 | 105443 | 105640 | CspA | 1.67e-28 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| LPJCLDEG_2 | 105443 | 105637 | CspR | 1.42e-26 | cold shock protein | 83.08 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPJCLDEG_1 | 0.0 | 1.0 | 0.0 |
| LPJCLDEG_2 | 0.0 | 1.0 | 0.0 |
| LPJCLDEG_3 | 0.0 | 1.0 | 0.0 |
| LPJCLDEG_4 | 1.0 | 0.0 | 1.0 |
| LPJCLDEG_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPJCLDEG_1 | 183856 | 214134 | False | Siphoviridae | VOG0641, VOG0648, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG4544, VOG0796, VOG0198, VOG4559, VOG4010, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG4548, VOG0321, VOG0650, VOG3622, VOG9667, VOG0862 |
| LPJCLDEG_1 | 399266 | 438289 | True | Siphoviridae | VOG4615, VOG0703, VOG1637, VOG4705, VOG4334, VOG4856, VOG4856, VOG5361, VOG5361, VOG10223, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG4317, VOG0205, VOG0204, VOG4568, VOG4556, VOG1886, VOG4544, VOG4581, VOG4841, VOG0198, VOG4657, VOG1183, VOG3307, VOG0638, VOG0327, VOG4609, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG4548, VOG0535, VOG2228, VOG8520, VOG8520, VOG4602, VOG6914, VOG0774, VOG7424, VOG0275, VOG0275 |
| LPJCLDEG_1 | 687383 | 692948 | True | Unknown | VOG5637, VOG5088, VOG11075, VOG0944 |
| LPJCLDEG_1 | 1007309 | 1013451 | False | Myoviridae | VOG0382, VOG0083, VOG5235, VOG5235, VOG5235, VOG6207 |
| LPJCLDEG_2 | 271429 | 276366 | True | Unknown | VOG8387, VOG0944, VOG5088, VOG5088, VOG5088, VOG5088 |
| LPJCLDEG_2 | 513952 | 521707 | True | Unknown | VOG8387, VOG0944, VOG5088, VOG0275, VOG5088, VOG5088 |
Phigaro v2.4.0 (Database: Jan. 2024 release)