Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LIDCLJGE_59 | 273762 | 273058 | WalR | 2.98e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LIDCLJGE_37 | 13951 | 14148 | CspR | 1.55e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LIDCLJGE_68 | 21106 | 21794 | rep38 | 691 / 1104 | 83.21 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LIDCLJGE_1 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_2 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_3 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_4 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_5 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_6 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_7 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_8 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_9 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_10 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_11 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_12 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_13 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_14 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_15 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_17 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_18 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_19 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_20 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_21 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_23 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_24 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_25 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_26 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_27 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_28 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_29 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_30 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_31 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_32 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_33 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_34 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_35 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_36 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_37 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_38 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_39 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_40 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_41 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_42 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_43 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_44 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_45 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_46 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_47 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_48 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_49 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_50 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_51 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_52 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_53 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_54 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_55 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_56 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_57 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_58 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_59 | 0.0 | 1.0 | 0.0 |
| LIDCLJGE_60 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_61 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_62 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_63 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_64 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_65 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_66 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_67 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_68 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_69 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_70 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_71 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_73 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_76 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_77 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_78 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_79 | 1.0 | 0.0 | 1.0 |
| LIDCLJGE_80 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LIDCLJGE_5 | 106981 | 142413 | False | Siphoviridae | VOG4566, VOG0189, VOG6623, VOG4693, VOG9741, VOG2820, VOG3643, VOG9671, VOG0044, VOG1563, VOG0198, VOG4570, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918, VOG4573 |
| LIDCLJGE_33 | 17293 | 48532 | False | Siphoviridae | VOG9897, VOG4602, VOG6495, VOG5353, VOG4552, VOG4600, VOG1309, VOG11003, VOG4566, VOG0189, VOG4693, VOG0744, VOG4673, VOG4841, VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG1898, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648, VOG1637, VOG0054, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)