Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HHKOEIPB_103 | 6264 | 5560 | WalR | 1.31e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HHKOEIPB_56 | 13788 | 13985 | CspR | 1.00e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HHKOEIPB_2 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_3 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_4 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_5 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_6 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_7 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_8 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_9 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_10 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_12 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_13 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_14 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_15 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_16 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_17 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_18 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_19 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_20 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_21 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_22 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_23 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_24 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_25 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_26 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_29 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_30 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_31 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_32 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_33 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_34 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_35 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_37 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_38 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_39 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_40 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_41 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_42 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_43 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_44 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_46 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_47 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_48 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_49 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_50 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_51 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_52 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_53 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_54 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_55 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_56 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_57 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_58 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_59 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_60 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_61 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_62 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_63 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_64 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_65 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_66 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_67 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_68 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_69 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_71 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_72 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_73 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_74 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_75 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_76 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_77 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_78 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_79 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_80 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_81 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_82 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_83 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_84 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_85 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_86 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_87 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_88 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_89 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_90 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_91 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_92 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_93 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_94 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_95 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_96 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_97 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_98 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_100 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_101 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_102 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_103 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_104 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_105 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_106 | 0.0 | 1.0 | 0.0 |
| HHKOEIPB_107 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_108 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_109 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_110 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_112 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_113 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_114 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_115 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_117 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_118 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_119 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_120 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_121 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_122 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_123 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_124 | 1.0 | 0.0 | 1.0 |
| HHKOEIPB_126 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HHKOEIPB_53 | 35243 | 43156 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4581, VOG4544 |
| HHKOEIPB_57 | 10467 | 44267 | False | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG0226, VOG11003, VOG9860, VOG0536, VOG0152, VOG3643, VOG0198, VOG4570, VOG3699, VOG4544, VOG0691, VOG0692, VOG5616, VOG1300, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG5587, VOG10044, VOG0701, VOG4705, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)