Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JHHLKJOC_15 | 327785 | 327081 | WalR | 3.39e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| JHHLKJOC_13 | 551687 | 551884 | CspR | 1.42e-32 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JHHLKJOC_16 | 21719 | 22780 | repUS74 | 1062 / 1062 | 97.55 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JHHLKJOC_1 | 0.0 | 1.0 | 0.0 |
| JHHLKJOC_2 | 1.0 | 0.0 | 1.0 |
| JHHLKJOC_3 | 0.0 | 1.0 | 0.0 |
| JHHLKJOC_4 | 1.0 | 0.0 | 1.0 |
| JHHLKJOC_5 | 0.0 | 1.0 | 0.0 |
| JHHLKJOC_6 | 0.0 | 1.0 | 0.0 |
| JHHLKJOC_7 | 0.0 | 1.0 | 0.0 |
| JHHLKJOC_8 | 0.0 | 1.0 | 0.0 |
| JHHLKJOC_9 | 0.0 | 1.0 | 0.0 |
| JHHLKJOC_10 | 1.0 | 0.0 | 1.0 |
| JHHLKJOC_11 | 1.0 | 0.0 | 1.0 |
| JHHLKJOC_12 | 1.0 | 0.0 | 1.0 |
| JHHLKJOC_13 | 0.0 | 1.0 | 0.0 |
| JHHLKJOC_14 | 0.0 | 1.0 | 0.0 |
| JHHLKJOC_15 | 0.0 | 1.0 | 0.0 |
| JHHLKJOC_16 | 1.0 | 0.0 | 1.0 |
| JHHLKJOC_17 | 1.0 | 0.0 | 1.0 |
| JHHLKJOC_19 | 1.0 | 0.0 | 1.0 |
| JHHLKJOC_20 | 1.0 | 0.0 | 1.0 |
| JHHLKJOC_21 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JHHLKJOC_8 | 4519 | 15743 | True | Siphoviridae | VOG4799, VOG0189, VOG0982, VOG5280, VOG5317, VOG3307, VOG0198, VOG5088, VOG5088, VOG4570, VOG4570, VOG4549 |
| JHHLKJOC_13 | 462932 | 469371 | True | Unknown | VOG5532, VOG0944, VOG8387, VOG0944, VOG1886, VOG5051, VOG4556 |
| JHHLKJOC_14 | 712171 | 763439 | False | Siphoviridae | VOG6083, VOG4918, VOG0703, VOG6540, VOG9955, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG4564, VOG0720, VOG4544, VOG0796, VOG4570, VOG3801, VOG0198, VOG5933, VOG3643, VOG0673, VOG2820, VOG0536, VOG7018, VOG0189, VOG4566, VOG0186, VOG1309, VOG5088, VOG2338, VOG6495, VOG9667, VOG4602, VOG3479 |
Phigaro v2.4.0 (Database: Jan. 2024 release)