Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JEDAJJHN_6 | 801609 | 800905 | WalR | 6.49e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| JEDAJJHN_5 | 342310 | 342507 | CspR | 4.30e-32 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JEDAJJHN_1 | 0.0 | 1.0 | 0.0 |
| JEDAJJHN_2 | 1.0 | 0.0 | 1.0 |
| JEDAJJHN_3 | 1.0 | 0.0 | 1.0 |
| JEDAJJHN_4 | 1.0 | 0.0 | 1.0 |
| JEDAJJHN_5 | 0.0 | 1.0 | 0.0 |
| JEDAJJHN_6 | 0.0 | 1.0 | 0.0 |
| JEDAJJHN_7 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JEDAJJHN_5 | 47779 | 75887 | False | Siphoviridae | VOG0862, VOG5353, VOG0181, VOG10867, VOG4799, VOG0189, VOG0982, VOG1298, VOG1563, VOG0198, VOG0198, VOG4841, VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG1898, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648, VOG1637 |
| JEDAJJHN_5 | 256846 | 264759 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4581, VOG4544 |
| JEDAJJHN_5 | 364875 | 400473 | False | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG0226, VOG11003, VOG9860, VOG0536, VOG0152, VOG3643, VOG0198, VOG4570, VOG3699, VOG4544, VOG0691, VOG0692, VOG5616, VOG1300, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG5587, VOG10044, VOG0701, VOG4705, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)