Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EGKPIPLM_91 | 6264 | 5560 | WalR | 1.31e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| EGKPIPLM_49 | 13822 | 14019 | CspR | 2.87e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EGKPIPLM_98 | 2714 | 3748 | rep38 | 1038 / 1104 | 91.91 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EGKPIPLM_1 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_3 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_4 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_5 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_6 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_7 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_8 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_9 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_10 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_11 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_12 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_13 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_14 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_15 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_16 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_17 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_18 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_19 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_20 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_21 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_22 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_23 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_24 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_25 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_26 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_27 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_29 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_30 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_31 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_32 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_33 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_34 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_35 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_36 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_38 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_39 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_40 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_41 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_42 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_43 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_44 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_45 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_46 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_47 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_48 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_49 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_50 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_51 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_52 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_53 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_54 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_55 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_56 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_57 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_58 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_59 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_60 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_62 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_63 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_64 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_65 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_66 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_67 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_68 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_69 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_70 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_71 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_72 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_73 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_74 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_75 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_76 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_77 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_78 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_79 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_80 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_81 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_82 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_83 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_84 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_85 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_86 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_87 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_89 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_90 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_91 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_92 | 0.0 | 1.0 | 0.0 |
| EGKPIPLM_93 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_94 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_95 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_97 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_98 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_99 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_100 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_107 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_110 | 1.0 | 0.0 | 1.0 |
| EGKPIPLM_111 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EGKPIPLM_46 | 35243 | 43156 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4581, VOG4544 |
| EGKPIPLM_49 | 36387 | 70187 | False | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG0226, VOG11003, VOG9860, VOG0536, VOG0152, VOG3643, VOG0198, VOG4570, VOG3699, VOG4544, VOG0691, VOG0692, VOG5616, VOG1300, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG5587, VOG10044, VOG0701, VOG4705, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)