Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GENEHGCC_110 | 6864 | 6160 | WalR | 4.81e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GENEHGCC_41 | 13979 | 14176 | CspR | 5.51e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GENEHGCC_19 | 660 | 1721 | repUS74 | 1062 / 1062 | 99.72 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GENEHGCC_1 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_3 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_4 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_5 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_6 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_7 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_8 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_9 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_10 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_11 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_12 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_13 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_15 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_16 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_17 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_18 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_19 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_20 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_21 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_22 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_23 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_24 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_26 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_27 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_28 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_29 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_30 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_31 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_32 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_33 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_34 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_35 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_36 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_37 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_38 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_39 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_40 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_41 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_42 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_43 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_44 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_46 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_47 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_48 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_49 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_50 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_51 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_52 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_53 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_54 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_55 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_56 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_57 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_58 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_59 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_60 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_61 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_62 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_63 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_64 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_65 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_66 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_67 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_68 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_69 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_70 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_71 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_72 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_73 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_74 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_76 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_77 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_78 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_79 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_80 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_81 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_82 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_83 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_85 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_86 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_87 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_88 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_89 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_90 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_91 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_92 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_93 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_94 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_95 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_96 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_97 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_98 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_99 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_100 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_101 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_102 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_103 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_104 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_105 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_106 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_107 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_108 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_109 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_110 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_111 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_112 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_113 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_114 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_115 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_116 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_117 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_119 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_120 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_121 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_122 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_123 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_125 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_126 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_127 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_128 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_129 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_130 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_131 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_132 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_133 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_134 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_135 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_136 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_137 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_143 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_147 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_148 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_149 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_150 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_151 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_152 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_154 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_156 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_157 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_158 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_159 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_160 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_161 | 0.0 | 1.0 | 0.0 |
| GENEHGCC_163 | 1.0 | 0.0 | 1.0 |
| GENEHGCC_164 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GENEHGCC_57 | 1581 | 24028 | False | Siphoviridae | VOG4649, VOG0054, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG4705, VOG0701, VOG9763, VOG5601, VOG0698, VOG0697, VOG0696, VOG0695, VOG4711, VOG4555, VOG1183, VOG5616, VOG0692, VOG0691, VOG4544, VOG3699 |
| GENEHGCC_71 | 19807 | 49984 | False | Siphoviridae | VOG1246, VOG6083, VOG9373, VOG4918, VOG0703, VOG7888, VOG7896, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG4564, VOG0720, VOG4544, VOG3699 |
Phigaro v2.4.0 (Database: Jan. 2024 release)