Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NLGPFLPH_109 | 28820 | 28116 | WalR | 5.87e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NLGPFLPH_49 | 21076 | 21273 | CspR | 7.70e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NLGPFLPH_1 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_3 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_4 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_5 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_6 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_7 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_8 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_9 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_10 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_11 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_12 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_13 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_15 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_16 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_17 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_18 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_19 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_20 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_21 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_22 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_23 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_24 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_25 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_26 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_27 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_28 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_29 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_30 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_31 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_32 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_33 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_34 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_35 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_36 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_37 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_38 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_39 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_40 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_41 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_42 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_43 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_44 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_45 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_46 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_47 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_48 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_49 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_50 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_51 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_52 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_53 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_54 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_55 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_56 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_57 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_58 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_59 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_60 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_61 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_62 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_63 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_64 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_65 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_66 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_67 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_68 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_69 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_70 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_71 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_72 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_73 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_74 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_75 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_76 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_77 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_78 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_79 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_80 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_81 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_82 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_83 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_84 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_85 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_86 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_87 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_88 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_89 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_90 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_91 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_92 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_93 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_94 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_95 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_96 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_97 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_98 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_99 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_100 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_101 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_102 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_103 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_104 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_105 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_106 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_107 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_108 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_109 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_110 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_111 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_112 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_113 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_114 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_115 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_117 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_118 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_119 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_121 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_122 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_123 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_124 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_126 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_128 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_129 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_130 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_133 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_134 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_135 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_136 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_137 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_138 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_141 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_142 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_143 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_146 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_148 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_150 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_151 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_152 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_153 | 0.0 | 1.0 | 0.0 |
| NLGPFLPH_154 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_156 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_160 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_162 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_163 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_166 | 1.0 | 0.0 | 1.0 |
| NLGPFLPH_169 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NLGPFLPH_46 | 96054 | 127801 | False | Siphoviridae | VOG0529, VOG10484, VOG9667, VOG8520, VOG8520, VOG7236, VOG0181, VOG10867, VOG1302, VOG4967, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG5998, VOG6795, VOG5562, VOG0198, VOG4841, VOG0519, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG1898, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648 |
| NLGPFLPH_49 | 42290 | 50253 | False | Siphoviridae | VOG1333, VOG4965, VOG8241, VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG8987, VOG11003, VOG9860, VOG0536, VOG9741 |
| NLGPFLPH_53 | 1335 | 27143 | False | Siphoviridae | VOG4570, VOG10904, VOG4549, VOG0531, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)