Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DEEGPOFP_36 | 31803 | 31099 | WalR | 5.40e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| DEEGPOFP_45 | 17897 | 18094 | CspR | 6.82e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DEEGPOFP_1 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_2 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_3 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_4 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_5 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_6 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_7 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_8 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_9 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_10 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_11 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_12 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_13 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_14 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_15 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_16 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_17 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_18 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_19 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_20 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_21 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_22 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_23 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_24 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_25 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_26 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_27 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_28 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_29 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_30 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_31 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_32 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_33 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_34 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_35 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_36 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_37 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_38 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_39 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_40 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_41 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_42 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_43 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_44 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_45 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_46 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_47 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_48 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_49 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_50 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_51 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_52 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_53 | 0.0 | 1.0 | 0.0 |
| DEEGPOFP_55 | 1.0 | 0.0 | 1.0 |
| DEEGPOFP_57 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DEEGPOFP_44 | 40269 | 50916 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| DEEGPOFP_45 | 38430 | 44990 | False | Siphoviridae | VOG8241, VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG8987, VOG11003, VOG9860, VOG0536, VOG9741 |
| DEEGPOFP_46 | 2027 | 25142 | False | Siphoviridae | VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG9955, VOG6540, VOG0703, VOG4918, VOG4605 |
| DEEGPOFP_52 | 156612 | 180756 | False | Siphoviridae | VOG6579, VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG1345, VOG6947 |
Phigaro v2.4.0 (Database: Jan. 2024 release)