Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LOEEIPGG_10 | 67228 | 67932 | WalR | 1.89e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LOEEIPGG_37 | 13822 | 14019 | CspR | 3.88e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LOEEIPGG_1 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_2 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_3 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_4 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_5 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_6 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_7 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_8 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_9 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_10 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_11 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_12 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_13 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_14 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_15 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_16 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_17 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_18 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_19 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_20 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_21 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_22 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_23 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_24 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_25 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_26 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_27 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_28 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_29 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_30 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_31 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_32 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_33 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_34 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_35 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_36 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_37 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_38 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_39 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_40 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_41 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_42 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_43 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_44 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_45 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_46 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_47 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_48 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_49 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_50 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_51 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_52 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_53 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_54 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_55 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_56 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_57 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_58 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_59 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_60 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_61 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_62 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_63 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_64 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_65 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_66 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_67 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_68 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_69 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_70 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_71 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_72 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_73 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_74 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_75 | 0.0 | 1.0 | 0.0 |
| LOEEIPGG_77 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_81 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_82 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_86 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_87 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_88 | 1.0 | 0.0 | 1.0 |
| LOEEIPGG_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LOEEIPGG_65 | 1633 | 38668 | False | Siphoviridae | VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4841, VOG6947, VOG4549, VOG10904, VOG4570, VOG0198, VOG0044, VOG1298, VOG3643, VOG6131, VOG0152, VOG9759, VOG0327, VOG4606, VOG6545, VOG3777, VOG4548, VOG6394, VOG0322, VOG0321, VOG3642, VOG4967, VOG0181, VOG0807, VOG4552, VOG5353 |
Phigaro v2.4.0 (Database: Jan. 2024 release)