Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CDGDDMGJ_35 | 29647 | 28943 | WalR | 3.22e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CDGDDMGJ_18 | 15757 | 15954 | CspR | 6.22e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CDGDDMGJ_1 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_2 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_3 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_4 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_5 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_6 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_8 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_9 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_10 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_11 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_12 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_13 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_14 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_15 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_16 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_17 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_18 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_19 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_20 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_21 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_22 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_23 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_24 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_25 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_26 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_27 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_28 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_29 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_30 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_31 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_32 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_33 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_34 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_35 | 0.0 | 1.0 | 0.0 |
| CDGDDMGJ_36 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_37 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_38 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_39 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_40 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_41 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_42 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_45 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_46 | 1.0 | 0.0 | 1.0 |
| CDGDDMGJ_47 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CDGDDMGJ_5 | 248845 | 251734 | False | Siphoviridae | VOG10867, VOG4799 |
Phigaro v2.4.0 (Database: Jan. 2024 release)