Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HMFJHDBE_128 | 6264 | 5560 | WalR | 4.22e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HMFJHDBE_36 | 13822 | 14019 | CspR | 1.22e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HMFJHDBE_15 | 5911 | 6969 | repUS75 | 1059 / 1059 | 96.51 | CP002393 |
| HMFJHDBE_20 | 9712 | 10773 | repUS74 | 1063 / 1062 | 93.41 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HMFJHDBE_1 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_3 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_5 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_6 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_7 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_8 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_9 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_10 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_11 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_12 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_13 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_14 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_15 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_16 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_17 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_18 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_19 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_20 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_21 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_23 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_24 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_25 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_26 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_27 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_28 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_29 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_30 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_32 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_33 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_34 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_35 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_36 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_37 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_38 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_39 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_40 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_41 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_42 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_43 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_44 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_45 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_46 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_47 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_48 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_49 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_50 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_51 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_52 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_53 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_54 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_55 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_56 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_57 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_58 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_59 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_60 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_61 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_62 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_63 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_64 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_65 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_66 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_67 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_68 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_69 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_70 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_71 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_72 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_73 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_74 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_76 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_77 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_78 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_79 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_80 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_81 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_82 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_83 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_84 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_85 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_86 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_87 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_89 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_90 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_91 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_92 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_93 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_94 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_96 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_97 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_98 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_99 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_100 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_101 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_102 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_103 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_104 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_105 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_106 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_107 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_109 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_110 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_111 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_112 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_113 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_114 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_115 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_116 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_117 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_118 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_119 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_120 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_121 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_122 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_123 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_125 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_126 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_127 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_128 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_129 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_131 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_133 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_134 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_135 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_136 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_137 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_138 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_139 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_140 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_141 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_142 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_143 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_144 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_145 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_146 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_147 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_148 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_149 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_150 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_151 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_152 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_153 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_154 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_155 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_156 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_157 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_158 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_159 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_160 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_161 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_163 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_164 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_165 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_168 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_170 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_171 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_174 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_175 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_176 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_177 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_178 | 0.0 | 1.0 | 0.0 |
| HMFJHDBE_179 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_180 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_181 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_182 | 1.0 | 0.0 | 1.0 |
| HMFJHDBE_183 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HMFJHDBE_104 | 13574 | 44156 | False | Siphoviridae | VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG0531, VOG9033, VOG4549, VOG5821, VOG4570, VOG0198, VOG1563, VOG3307, VOG0044, VOG4567, VOG3643, VOG3643, VOG3307, VOG2820, VOG0195 |
| HMFJHDBE_105 | 4262 | 17834 | False | Siphoviridae | VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4841, VOG1345, VOG4549, VOG4570, VOG0198, VOG1563 |
Phigaro v2.4.0 (Database: Jan. 2024 release)