Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LHJEHBFF_75 | 7884 | 7180 | WalR | 4.49e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LHJEHBFF_101 | 9840 | 10037 | CspR | 1.45e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LHJEHBFF_121 | 2020 | 3081 | repUS74 | 1062 / 1062 | 93.79 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LHJEHBFF_1 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_2 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_3 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_5 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_6 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_7 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_8 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_9 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_10 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_11 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_12 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_13 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_14 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_15 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_16 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_17 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_18 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_19 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_20 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_21 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_22 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_23 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_24 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_25 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_26 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_27 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_29 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_30 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_31 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_32 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_33 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_34 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_35 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_36 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_37 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_38 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_39 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_40 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_41 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_42 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_43 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_44 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_45 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_46 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_47 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_48 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_49 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_50 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_51 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_52 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_53 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_54 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_55 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_56 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_57 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_58 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_59 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_60 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_61 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_62 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_63 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_64 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_65 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_66 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_67 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_68 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_69 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_70 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_71 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_72 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_73 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_74 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_75 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_76 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_77 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_78 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_79 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_80 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_81 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_82 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_83 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_84 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_86 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_87 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_88 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_89 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_90 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_91 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_92 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_93 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_94 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_95 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_96 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_97 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_98 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_99 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_100 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_101 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_102 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_103 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_104 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_105 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_106 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_107 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_108 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_109 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_110 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_111 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_112 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_113 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_114 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_115 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_116 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_117 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_118 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_119 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_120 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_121 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_122 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_123 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_124 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_125 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_126 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_127 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_128 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_129 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_130 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_131 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_136 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_138 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_139 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_141 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_142 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_143 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_144 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_145 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_147 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_148 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_151 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_153 | 0.0 | 1.0 | 0.0 |
| LHJEHBFF_155 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_156 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_157 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_159 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_162 | 1.0 | 0.0 | 1.0 |
| LHJEHBFF_165 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LHJEHBFF_79 | 5251 | 17195 | False | Siphoviridae | VOG1581, VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
| LHJEHBFF_113 | 76387 | 80052 | True | Unknown | VOG0275, VOG6495, VOG8916 |
| LHJEHBFF_116 | 737 | 29658 | False | Siphoviridae | VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG6947, VOG4549, VOG4570, VOG0198, VOG1563, VOG1183, VOG3643, VOG2820, VOG9741, VOG4693, VOG4813, VOG7735, VOG0025, VOG4799, VOG10867, VOG0181, VOG4552, VOG3622 |
Phigaro v2.4.0 (Database: Jan. 2024 release)