Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CIGLBBMI_99 | 21875 | 21171 | WalR | 5.42e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CIGLBBMI_37 | 9977 | 10174 | CspR | 1.58e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CIGLBBMI_16 | 2327 | 3388 | repUS74 | 1063 / 1062 | 94.64 | CP000424 |
| CIGLBBMI_18 | 350 | 1225 | rep38 | 879 / 903 | 85.44 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CIGLBBMI_1 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_3 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_4 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_5 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_6 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_7 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_8 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_9 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_10 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_11 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_12 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_13 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_14 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_15 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_16 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_17 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_18 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_19 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_20 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_21 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_22 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_23 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_24 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_26 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_27 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_28 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_29 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_30 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_31 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_32 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_33 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_34 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_35 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_36 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_37 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_38 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_39 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_40 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_41 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_42 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_43 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_44 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_45 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_46 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_47 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_48 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_49 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_50 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_51 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_52 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_53 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_54 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_55 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_56 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_57 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_58 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_59 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_60 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_61 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_62 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_63 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_64 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_65 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_66 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_67 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_68 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_69 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_70 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_71 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_72 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_73 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_74 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_75 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_76 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_77 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_78 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_79 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_80 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_81 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_82 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_83 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_84 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_85 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_86 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_87 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_88 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_89 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_90 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_91 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_92 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_93 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_94 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_95 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_96 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_97 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_98 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_99 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_100 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_101 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_102 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_103 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_104 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_105 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_107 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_108 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_109 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_110 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_112 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_113 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_115 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_116 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_117 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_118 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_119 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_120 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_121 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_122 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_123 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_125 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_127 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_129 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_131 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_132 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_133 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_134 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_135 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_136 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_137 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_140 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_141 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_142 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_143 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_144 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_149 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_150 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_154 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_155 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_156 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_157 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_158 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_159 | 0.0 | 1.0 | 0.0 |
| CIGLBBMI_162 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_163 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_165 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_166 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_167 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_169 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_172 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_173 | 1.0 | 0.0 | 1.0 |
| CIGLBBMI_174 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CIGLBBMI_37 | 32324 | 38130 | False | Unknown | VOG1305, VOG8241, VOG1309, VOG0186, VOG4566, VOG0226 |
| CIGLBBMI_57 | 1 | 17091 | False | Siphoviridae | VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG4564, VOG0720, VOG4544, VOG0796 |
| CIGLBBMI_66 | 6294 | 32737 | False | Siphoviridae | VOG0195, VOG4581, VOG1886, VOG0202, VOG4556, VOG4568, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0753, VOG0703, VOG8294, VOG6495 |
| CIGLBBMI_86 | 1923 | 30131 | False | Siphoviridae | VOG6163, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6947, VOG4549, VOG4570, VOG3490, VOG5427, VOG0198, VOG1563, VOG3643, VOG2820, VOG4237, VOG9741, VOG4693, VOG6623, VOG7018, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG1302, VOG4552, VOG5353, VOG8520, VOG0862 |
| CIGLBBMI_101 | 8003 | 18362 | False | Siphoviridae | VOG1581, VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)